Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4708 and Psyr_4709 are separated by 783 nucleotides Psyr_4709 and Psyr_4710 are separated by 67 nucleotides Psyr_4710 and Psyr_4711 overlap by 4 nucleotides
Psyr_4708: Psyr_4708 - transcriptional regulator, AraC family with amidase-like domain protein, at 5,578,250 to 5,579,353
_4708
Psyr_4709: Psyr_4709 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,580,137 to 5,581,084
_4709
Psyr_4710: Psyr_4710 - Binding-protein-dependent transport systems inner membrane component, at 5,581,152 to 5,581,997
_4710
Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172
_4711
Position (kb) 5580
5581
5582 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5579.249 kb on + strand at 5579.359 kb on + strand at 5579.359 kb on + strand at 5579.359 kb on + strand at 5579.359 kb on + strand at 5579.359 kb on + strand at 5579.359 kb on + strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.360 kb on - strand at 5579.371 kb on + strand at 5579.527 kb on - strand at 5579.527 kb on - strand at 5579.625 kb on - strand at 5579.787 kb on + strand at 5579.865 kb on - strand at 5579.865 kb on - strand at 5579.869 kb on + strand at 5579.869 kb on + strand at 5579.869 kb on + strand at 5579.870 kb on - strand at 5579.914 kb on + strand at 5579.915 kb on - strand at 5579.932 kb on + strand at 5579.956 kb on - strand at 5579.977 kb on - strand at 5580.011 kb on + strand at 5580.011 kb on + strand at 5580.011 kb on + strand at 5580.011 kb on + strand at 5580.012 kb on - strand at 5580.012 kb on - strand at 5580.012 kb on - strand at 5580.012 kb on - strand at 5580.178 kb on + strand at 5580.190 kb on - strand at 5580.220 kb on + strand at 5580.220 kb on + strand at 5580.220 kb on + strand at 5580.257 kb on - strand, within Psyr_4709 at 5580.266 kb on - strand, within Psyr_4709 at 5580.266 kb on - strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.302 kb on + strand, within Psyr_4709 at 5580.303 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.342 kb on - strand, within Psyr_4709 at 5580.476 kb on + strand, within Psyr_4709 at 5580.476 kb on + strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.477 kb on - strand, within Psyr_4709 at 5580.503 kb on + strand, within Psyr_4709 at 5580.503 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.569 kb on + strand, within Psyr_4709 at 5580.596 kb on - strand, within Psyr_4709 at 5580.779 kb on + strand, within Psyr_4709 at 5580.780 kb on - strand, within Psyr_4709 at 5580.815 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.833 kb on + strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.834 kb on - strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.876 kb on + strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5580.877 kb on - strand, within Psyr_4709 at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.082 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.185 kb on + strand at 5581.186 kb on - strand at 5581.186 kb on - strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.231 kb on - strand at 5581.411 kb on - strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.573 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.765 kb on - strand, within Psyr_4710 at 5581.930 kb on + strand at 5581.930 kb on + strand at 5581.931 kb on - strand at 5581.931 kb on - strand at 5581.981 kb on + strand at 5581.982 kb on - strand at 5581.999 kb on + strand at 5581.999 kb on + strand at 5582.000 kb on - strand at 5582.019 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,579,249 + +1.9 5,579,359 + +0.5 5,579,359 + +1.8 5,579,359 + +0.4 5,579,359 + +0.1 5,579,359 + -2.4 5,579,359 + +1.5 5,579,360 - -1.4 5,579,360 - +2.4 5,579,360 - -0.5 5,579,360 - +0.3 5,579,360 - +0.3 5,579,360 - +0.9 5,579,360 - -0.6 5,579,360 - +1.2 5,579,371 + +0.1 5,579,527 - +0.1 5,579,527 - -0.3 5,579,625 - -0.0 5,579,787 + -1.9 5,579,865 - +0.1 5,579,865 - -0.4 5,579,869 + +0.5 5,579,869 + -1.7 5,579,869 + +0.1 5,579,870 - +0.7 5,579,914 + -0.6 5,579,915 - +1.2 5,579,932 + -2.2 5,579,956 - +0.1 5,579,977 - +0.5 5,580,011 + -0.1 5,580,011 + -0.5 5,580,011 + -0.7 5,580,011 + +0.6 5,580,012 - +1.4 5,580,012 - +1.1 5,580,012 - +0.5 5,580,012 - -1.0 5,580,178 + -0.5 5,580,190 - -1.3 5,580,220 + +0.3 5,580,220 + +0.7 5,580,220 + -1.8 5,580,257 - Psyr_4709 0.13 +0.4 5,580,266 - Psyr_4709 0.14 -0.8 5,580,266 - Psyr_4709 0.14 +0.2 5,580,302 + Psyr_4709 0.17 -0.8 5,580,302 + Psyr_4709 0.17 -2.4 5,580,302 + Psyr_4709 0.17 +0.2 5,580,303 - Psyr_4709 0.18 +1.0 5,580,342 - Psyr_4709 0.22 +0.5 5,580,342 - Psyr_4709 0.22 -0.2 5,580,342 - Psyr_4709 0.22 -1.7 5,580,476 + Psyr_4709 0.36 -1.5 5,580,476 + Psyr_4709 0.36 -0.3 5,580,477 - Psyr_4709 0.36 +1.5 5,580,477 - Psyr_4709 0.36 +0.3 5,580,477 - Psyr_4709 0.36 -2.2 5,580,477 - Psyr_4709 0.36 +0.9 5,580,477 - Psyr_4709 0.36 -1.9 5,580,503 + Psyr_4709 0.39 -1.0 5,580,503 + Psyr_4709 0.39 -2.3 5,580,569 + Psyr_4709 0.46 -0.3 5,580,569 + Psyr_4709 0.46 +0.5 5,580,569 + Psyr_4709 0.46 +0.4 5,580,569 + Psyr_4709 0.46 +0.1 5,580,596 - Psyr_4709 0.48 -1.2 5,580,779 + Psyr_4709 0.68 -0.1 5,580,780 - Psyr_4709 0.68 -0.6 5,580,815 + Psyr_4709 0.72 +0.2 5,580,833 + Psyr_4709 0.73 +5.5 5,580,833 + Psyr_4709 0.73 -1.7 5,580,833 + Psyr_4709 0.73 +0.9 5,580,833 + Psyr_4709 0.73 -0.7 5,580,833 + Psyr_4709 0.73 +0.0 5,580,833 + Psyr_4709 0.73 -2.2 5,580,833 + Psyr_4709 0.73 -2.1 5,580,834 - Psyr_4709 0.74 -1.6 5,580,834 - Psyr_4709 0.74 +0.1 5,580,834 - Psyr_4709 0.74 -1.0 5,580,834 - Psyr_4709 0.74 -0.4 5,580,834 - Psyr_4709 0.74 +0.3 5,580,834 - Psyr_4709 0.74 -0.2 5,580,834 - Psyr_4709 0.74 -0.5 5,580,834 - Psyr_4709 0.74 +0.7 5,580,834 - Psyr_4709 0.74 +0.5 5,580,876 + Psyr_4709 0.78 -0.5 5,580,876 + Psyr_4709 0.78 -0.9 5,580,876 + Psyr_4709 0.78 +0.6 5,580,876 + Psyr_4709 0.78 -0.4 5,580,876 + Psyr_4709 0.78 -1.7 5,580,876 + Psyr_4709 0.78 +0.2 5,580,876 + Psyr_4709 0.78 -0.8 5,580,876 + Psyr_4709 0.78 +0.1 5,580,876 + Psyr_4709 0.78 -1.3 5,580,876 + Psyr_4709 0.78 -1.6 5,580,877 - Psyr_4709 0.78 -0.3 5,580,877 - Psyr_4709 0.78 +0.6 5,580,877 - Psyr_4709 0.78 -1.4 5,580,877 - Psyr_4709 0.78 -0.1 5,581,002 + -1.0 5,581,002 + +1.1 5,581,002 + +0.7 5,581,082 + +0.1 5,581,166 + -0.6 5,581,166 + -0.5 5,581,166 + +0.2 5,581,185 + +1.2 5,581,186 - +0.2 5,581,186 - +0.6 5,581,230 + -0.0 5,581,230 + -0.4 5,581,230 + -2.8 5,581,231 - +0.1 5,581,411 - Psyr_4710 0.31 +0.1 5,581,518 + Psyr_4710 0.43 +1.3 5,581,518 + Psyr_4710 0.43 +1.5 5,581,518 + Psyr_4710 0.43 -3.2 5,581,573 - Psyr_4710 0.50 -1.3 5,581,669 - Psyr_4710 0.61 -0.2 5,581,669 - Psyr_4710 0.61 -1.5 5,581,765 - Psyr_4710 0.72 +0.8 5,581,930 + +0.4 5,581,930 + -0.6 5,581,931 - -1.0 5,581,931 - -3.6 5,581,981 + +0.0 5,581,982 - -0.0 5,581,999 + +0.3 5,581,999 + +0.3 5,582,000 - +0.9 5,582,019 + +0.1
Or see this region's nucleotide sequence