Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4690

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,556,741	+				+0.1
5,556,741	+				-0.9
5,556,742	-				+0.1
5,556,744	+				-2.6
5,556,744	+				-0.3
5,556,744	+				-0.2
5,556,744	+				+3.4
5,556,744	+				+0.3
5,556,745	-				-0.5
5,556,745	-				-1.6
5,556,745	-				-0.8
5,556,745	-				-1.1
5,556,745	-				-2.6
5,556,829	+				-0.6
5,556,829	+				-0.8
5,556,880	+				+2.4
5,556,880	+				+0.9
5,556,932	+				-0.8
5,556,984	+		Psyr_4689	0.16	-0.7
5,556,985	-		Psyr_4689	0.16	+0.2
5,557,042	+		Psyr_4689	0.23	-0.3
5,557,042	+		Psyr_4689	0.23	-0.7
5,557,043	-		Psyr_4689	0.23	-0.6
5,557,043	-		Psyr_4689	0.23	-0.7
5,557,079	+		Psyr_4689	0.28	-0.2
5,557,116	+		Psyr_4689	0.33	+1.6
5,557,117	-		Psyr_4689	0.33	-0.0
5,557,244	+		Psyr_4689	0.50	-0.1
5,557,297	+		Psyr_4689	0.57	+0.9
5,557,297	+		Psyr_4689	0.57	-1.4
5,557,297	+		Psyr_4689	0.57	-2.1
5,557,297	+		Psyr_4689	0.57	-0.8
5,557,297	+		Psyr_4689	0.57	+4.0
5,557,297	+		Psyr_4689	0.57	-2.0
5,557,297	+		Psyr_4689	0.57	-0.1
5,557,298	-		Psyr_4689	0.57	-0.6
5,557,298	-		Psyr_4689	0.57	+0.5
5,557,298	-		Psyr_4689	0.57	+0.6
5,557,489	+		Psyr_4689	0.82	-0.5
5,557,489	+		Psyr_4689	0.82	+0.2
5,557,489	+		Psyr_4689	0.82	-0.1
5,557,490	-		Psyr_4689	0.82	-0.3
5,557,618	+				-0.1
5,557,619	-				+0.7
5,557,626	+				-1.3
5,557,665	+				-1.6
5,557,665	+				-2.7
5,557,676	+				+1.1
5,557,677	-				-0.5
5,557,677	-				+0.2
5,557,690	+				-0.2
5,557,691	-				-0.2
5,557,717	+				+0.8
5,557,717	+				+0.6
5,557,717	+				+1.3
5,557,718	-				-0.9
5,557,718	-				-1.5
5,557,720	+				-2.0
5,557,721	-				+0.5
5,557,721	-				+0.4
5,557,721	-				+0.2
5,558,136	+		Psyr_4690	0.22	+0.2
5,558,136	+		Psyr_4690	0.22	-0.9
5,558,137	-		Psyr_4690	0.22	+0.2
5,558,137	-		Psyr_4690	0.22	-0.6
5,558,145	+		Psyr_4690	0.23	-0.2
5,558,146	-		Psyr_4690	0.23	-0.8
5,558,146	-		Psyr_4690	0.23	+0.5
5,558,236	+		Psyr_4690	0.28	-0.8
5,558,236	+		Psyr_4690	0.28	+0.3
5,558,236	+		Psyr_4690	0.28	-0.9
5,558,236	+		Psyr_4690	0.28	-0.4
5,558,236	+		Psyr_4690	0.28	-0.2
5,558,236	+		Psyr_4690	0.28	-0.2
5,558,237	-		Psyr_4690	0.28	+0.1
5,558,237	-		Psyr_4690	0.28	+0.9
5,558,237	-		Psyr_4690	0.28	+0.1
5,558,237	-		Psyr_4690	0.28	-0.2
5,558,237	-		Psyr_4690	0.28	+0.7
5,558,280	+		Psyr_4690	0.30	+0.8
5,558,281	-		Psyr_4690	0.30	-2.0
5,558,430	+		Psyr_4690	0.38	-0.5
5,558,430	+		Psyr_4690	0.38	-1.1
5,558,430	+		Psyr_4690	0.38	+0.1
5,558,430	+		Psyr_4690	0.38	-0.0
5,558,430	+		Psyr_4690	0.38	-0.9
5,558,430	+		Psyr_4690	0.38	-1.3
5,558,430	+		Psyr_4690	0.38	-2.6
5,558,431	-		Psyr_4690	0.38	-0.1
5,558,431	-		Psyr_4690	0.38	-1.4
5,558,431	-		Psyr_4690	0.38	+0.6
5,558,431	-		Psyr_4690	0.38	-1.4
5,558,431	-		Psyr_4690	0.38	+2.1
5,558,431	-		Psyr_4690	0.38	+0.3
5,558,511	+		Psyr_4690	0.42	-0.2
5,558,512	-		Psyr_4690	0.42	+0.4
5,558,727	+		Psyr_4690	0.53	-1.7
5,558,727	+		Psyr_4690	0.53	-0.3
5,558,727	+		Psyr_4690	0.53	+0.2
5,558,727	+		Psyr_4690	0.53	+0.1
5,558,727	+		Psyr_4690	0.53	+0.3
5,558,727	+		Psyr_4690	0.53	+0.4
5,558,727	+		Psyr_4690	0.53	+0.3
5,558,727	+		Psyr_4690	0.53	-1.1
5,558,727	+		Psyr_4690	0.53	-0.6
5,558,727	+		Psyr_4690	0.53	-1.0
5,558,727	+		Psyr_4690	0.53	+0.5
5,558,727	+		Psyr_4690	0.53	-0.4
5,558,727	+		Psyr_4690	0.53	-0.0
5,558,727	+		Psyr_4690	0.53	-1.0
5,558,727	+		Psyr_4690	0.53	+0.1
5,558,727	+		Psyr_4690	0.53	+0.6
5,558,727	+		Psyr_4690	0.53	-0.3
5,558,727	+		Psyr_4690	0.53	-0.9
5,558,727	+		Psyr_4690	0.53	+0.8
5,558,727	+		Psyr_4690	0.53	-0.4
5,558,727	+		Psyr_4690	0.53	+0.2
5,558,727	+		Psyr_4690	0.53	-0.2
5,558,727	+		Psyr_4690	0.53	+1.3
5,558,727	+		Psyr_4690	0.53	-0.2
5,558,727	+		Psyr_4690	0.53	-0.3
5,558,727	+		Psyr_4690	0.53	+2.4
5,558,727	+		Psyr_4690	0.53	+0.2
5,558,727	+		Psyr_4690	0.53	+1.1
5,558,727	+		Psyr_4690	0.53	+1.0
5,558,727	+		Psyr_4690	0.53	-2.3
5,558,728	-		Psyr_4690	0.53	+0.4
5,558,728	-		Psyr_4690	0.53	+1.0
5,558,728	-		Psyr_4690	0.53	+0.7
5,558,728	-		Psyr_4690	0.53	-0.2
5,558,728	-		Psyr_4690	0.53	-0.3
5,558,728	-		Psyr_4690	0.53	+0.1
5,558,728	-		Psyr_4690	0.53	-0.3
5,558,728	-		Psyr_4690	0.53	+1.0
5,558,728	-		Psyr_4690	0.53	-0.2
5,558,728	-		Psyr_4690	0.53	-0.3
5,558,728	-		Psyr_4690	0.53	-1.8
5,558,728	-		Psyr_4690	0.53	-0.3
5,558,728	-		Psyr_4690	0.53	-1.2
5,558,728	-		Psyr_4690	0.53	-0.4
5,558,728	-		Psyr_4690	0.53	+0.3
5,558,728	-		Psyr_4690	0.53	+2.2
5,558,728	-		Psyr_4690	0.53	-1.5
5,558,728	-		Psyr_4690	0.53	-1.4
5,558,728	-		Psyr_4690	0.53	+0.4
5,558,729	+		Psyr_4690	0.53	-1.2
5,558,729	+		Psyr_4690	0.53	+1.1
5,558,730	-		Psyr_4690	0.53	-0.6
5,558,760	+		Psyr_4690	0.55	-1.2
5,558,760	+		Psyr_4690	0.55	-0.7
5,558,760	+		Psyr_4690	0.55	-0.8
5,558,761	-		Psyr_4690	0.55	+1.3
5,558,838	+		Psyr_4690	0.59	+1.4
5,558,838	+		Psyr_4690	0.59	-1.3
5,558,838	+		Psyr_4690	0.59	-0.0
5,558,838	+		Psyr_4690	0.59	+1.1
5,558,838	+		Psyr_4690	0.59	-0.6
5,558,839	-		Psyr_4690	0.59	-0.1
5,558,839	-		Psyr_4690	0.59	-0.0
5,558,839	-		Psyr_4690	0.59	-0.2
5,558,839	-		Psyr_4690	0.59	+0.2
5,558,839	-		Psyr_4690	0.59	-0.8
5,558,839	-		Psyr_4690	0.59	-0.6
5,558,839	-		Psyr_4690	0.59	-0.7
5,558,839	-		Psyr_4690	0.59	-1.3
5,558,839	-		Psyr_4690	0.59	-1.7
5,558,839	-		Psyr_4690	0.59	-1.3
5,558,839	-		Psyr_4690	0.59	-0.1
5,558,839	-		Psyr_4690	0.59	+1.4
5,558,839	-		Psyr_4690	0.59	+0.4
5,558,839	-		Psyr_4690	0.59	-0.4
5,559,060	+		Psyr_4690	0.70	-0.4
5,559,060	+		Psyr_4690	0.70	+0.4
5,559,060	+		Psyr_4690	0.70	+0.3
5,559,060	+		Psyr_4690	0.70	+0.1
5,559,060	+		Psyr_4690	0.70	-1.8
5,559,060	+		Psyr_4690	0.70	-0.7
5,559,060	+		Psyr_4690	0.70	-0.3
5,559,061	-		Psyr_4690	0.71	-1.1
5,559,061	-		Psyr_4690	0.71	-1.2
5,559,142	-		Psyr_4690	0.75	-0.1
5,559,540	-				+0.6
5,559,663	+				+1.8
5,559,663	+				+0.5
5,559,664	-				+0.4
5,559,665	+				+0.1
5,559,665	+				+0.2
5,559,665	+				-0.6
5,559,665	+				+1.9
5,559,665	+				+1.1
5,559,665	+				+0.4
5,559,665	+				-0.4
5,559,665	+				-1.1
5,559,665	+				+5.6
5,559,665	+				-2.2
5,559,666	-				+0.5
5,559,666	-				-0.5
5,559,666	-				+1.2
5,559,666	-				-0.1
5,559,666	-				+1.6
5,559,666	-				-0.6
5,559,666	-				-0.4
5,559,666	-				-2.2
5,559,666	-				-2.0
5,559,666	-				+0.6
5,559,666	-				+1.7
5,559,666	-				-0.2
5,559,666	-				-0.2
5,559,667	+				+0.2
5,559,667	+				+0.1
5,559,667	+				+0.0
5,559,667	+				-0.2
5,559,667	+				+0.3
5,559,667	+				+0.2
5,559,667	+				+0.3
5,559,667	+				+0.7
5,559,667	+				-3.1
5,559,667	+				+0.7
5,559,668	-				-1.5
5,559,668	-				+5.1
5,559,668	-				+0.8
5,559,668	-				-0.3
5,559,668	-				-0.4
5,559,668	-				+1.5
5,559,668	-				-1.1
5,559,668	-				+1.1
5,559,668	-				+0.5
5,559,668	-				-0.5
5,559,678	+				-0.1
5,559,730	+				+1.3
5,559,730	+				+0.3
5,559,730	+				-0.5
5,559,730	+				-0.6
5,559,730	+				+0.1
5,559,731	-				-0.9
5,559,731	-				+1.7
5,559,731	-				+0.3
5,559,731	-				-0.9
5,559,731	-				-0.7
5,559,731	-				-1.1
5,559,798	+				+0.0
5,559,799	-				-0.7
5,559,799	-				-0.0
5,559,810	+				-2.9
5,559,811	-				-0.8
5,559,811	-				+0.2
5,559,854	+				+1.2
5,559,855	-				+0.5
5,559,920	+				+0.4
5,559,920	+				+0.8
5,559,920	+				+1.0
5,559,921	-				-0.2
5,559,921	-				+0.1
5,559,921	-				+2.0
5,559,941	+				+0.1
5,559,942	-				+0.9
5,559,942	-				-0.1
5,559,942	-				-1.1
5,559,942	-				+0.3
5,560,005	-		Psyr_4691	0.13	-0.8
5,560,005	-		Psyr_4691	0.13	-0.6
5,560,274	+		Psyr_4691	0.45	-1.2
5,560,274	+		Psyr_4691	0.45	-3.3
5,560,274	+		Psyr_4691	0.45	+0.1
5,560,274	+		Psyr_4691	0.45	+1.0
5,560,274	+		Psyr_4691	0.45	-1.7
5,560,274	+		Psyr_4691	0.45	+3.2
5,560,274	+		Psyr_4691	0.45	-0.5
5,560,274	+		Psyr_4691	0.45	+0.3
5,560,275	-		Psyr_4691	0.46	-0.6
5,560,275	-		Psyr_4691	0.46	-0.1
5,560,275	-		Psyr_4691	0.46	-0.8
5,560,275	-		Psyr_4691	0.46	+1.0
5,560,275	-		Psyr_4691	0.46	+0.5
5,560,275	-		Psyr_4691	0.46	+1.2
5,560,320	-		Psyr_4691	0.51	+0.4
5,560,430	+		Psyr_4691	0.64	-1.2
5,560,430	+		Psyr_4691	0.64	-1.0
5,560,430	+		Psyr_4691	0.64	-0.7
5,560,430	+		Psyr_4691	0.64	+0.0
5,560,431	-		Psyr_4691	0.64	-0.3
5,560,431	-		Psyr_4691	0.64	-0.9