Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4377

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,231,592	+				-0.6
5,231,598	+				-0.0
5,231,598	+				+0.0
5,231,598	+				-0.7
5,231,598	+				+0.3
5,231,598	+				-0.3
5,231,599	-				+0.9
5,231,602	+				+0.3
5,231,602	+				-0.7
5,231,602	+				+0.8
5,231,602	+				+0.7
5,231,602	+				+0.9
5,231,603	-				-0.8
5,231,603	-				+0.5
5,231,603	-				-1.3
5,231,603	-				-0.7
5,231,603	-				+0.7
5,231,603	-				-1.6
5,231,606	+				+0.0
5,231,606	+				-0.3
5,231,606	+				+0.1
5,231,606	+				-1.6
5,231,607	-				-0.1
5,231,623	+				-0.1
5,231,647	+				-1.1
5,231,647	+				+0.7
5,231,647	+				-1.5
5,231,648	-				-0.4
5,231,648	-				-0.8
5,231,648	-				+0.4
5,231,648	-				+0.3
5,231,648	-				+0.1
5,231,648	-				+1.0
5,231,648	-				-0.1
5,231,648	-				-0.9
5,231,757	-				-0.2
5,231,757	-				+2.2
5,231,775	+				-0.2
5,231,776	-				-0.2
5,231,837	+		Psyr_4376	0.11	-0.5
5,231,910	+		Psyr_4376	0.20	-2.0
5,231,910	+		Psyr_4376	0.20	+1.6
5,231,910	+		Psyr_4376	0.20	-0.6
5,231,910	+		Psyr_4376	0.20	+0.8
5,232,068	+		Psyr_4376	0.40	-1.2
5,232,384	-		Psyr_4376	0.80	+0.8
5,232,423	+		Psyr_4376	0.85	+1.4
5,232,423	+		Psyr_4376	0.85	+0.5
5,232,423	+		Psyr_4376	0.85	-1.5
5,232,424	-		Psyr_4376	0.85	-0.9
5,232,424	-		Psyr_4376	0.85	+1.0
5,232,424	-		Psyr_4376	0.85	-1.3
5,232,431	+		Psyr_4376	0.86	-0.4
5,232,431	+		Psyr_4376	0.86	-0.4
5,232,431	+		Psyr_4376	0.86	+0.8
5,232,431	+		Psyr_4376	0.86	+0.1
5,232,431	+		Psyr_4376	0.86	+0.2
5,232,431	+		Psyr_4376	0.86	-0.1
5,232,432	-		Psyr_4376	0.86	-0.7
5,232,432	-		Psyr_4376	0.86	-0.1
5,232,432	-		Psyr_4376	0.86	-0.1
5,232,432	-		Psyr_4376	0.86	+0.2
5,232,432	-		Psyr_4376	0.86	-1.6
5,232,432	-		Psyr_4376	0.86	+1.0
5,232,432	-		Psyr_4376	0.86	+0.0
5,232,432	-		Psyr_4376	0.86	-0.0
5,232,573	+				+0.1
5,232,574	-				-1.2
5,232,583	+				+0.0
5,232,640	+				-1.9
5,232,640	+				+0.2
5,232,640	+				+0.3
5,232,640	+				-0.3
5,232,641	-				-0.7
5,232,641	-				-1.2
5,233,040	+		Psyr_4377	0.29	-0.8
5,233,040	+		Psyr_4377	0.29	-1.3
5,233,040	+		Psyr_4377	0.29	-0.4
5,233,041	-		Psyr_4377	0.30	-1.3
5,233,054	+		Psyr_4377	0.30	-1.0
5,233,054	+		Psyr_4377	0.30	+3.5
5,233,055	-		Psyr_4377	0.30	-0.1
5,233,055	-		Psyr_4377	0.30	-1.7
5,233,055	-		Psyr_4377	0.30	-0.8
5,233,228	+		Psyr_4377	0.41	-2.8
5,233,228	+		Psyr_4377	0.41	+1.0
5,233,228	+		Psyr_4377	0.41	+2.2
5,233,228	+		Psyr_4377	0.41	+0.1
5,233,228	+		Psyr_4377	0.41	-0.5
5,233,229	-		Psyr_4377	0.41	-0.3
5,233,229	-		Psyr_4377	0.41	-0.7
5,233,229	-		Psyr_4377	0.41	-1.5
5,233,229	-		Psyr_4377	0.41	+0.9
5,233,250	-		Psyr_4377	0.42	-2.4
5,233,250	-				-1.3
5,233,306	+		Psyr_4377	0.46	-0.8
5,233,306	+		Psyr_4377	0.46	+0.7
5,233,306	+		Psyr_4377	0.46	-0.0
5,233,306	+		Psyr_4377	0.46	-1.6
5,233,306	+		Psyr_4377	0.46	+0.9
5,233,306	+		Psyr_4377	0.46	-2.7
5,233,306	+		Psyr_4377	0.46	-1.2
5,233,306	+		Psyr_4377	0.46	-0.4
5,233,306	+		Psyr_4377	0.46	-1.0
5,233,306	+		Psyr_4377	0.46	-0.2
5,233,306	+		Psyr_4377	0.46	-0.7
5,233,306	+		Psyr_4377	0.46	+0.8
5,233,306	+		Psyr_4377	0.46	-1.2
5,233,306	+		Psyr_4377	0.46	-1.1
5,233,306	+		Psyr_4377	0.46	+0.2
5,233,306	+		Psyr_4377	0.46	-2.9
5,233,306	+		Psyr_4377	0.46	+0.4
5,233,306	+		Psyr_4377	0.46	+1.6
5,233,307	-		Psyr_4377	0.46	-0.9
5,233,307	-		Psyr_4377	0.46	-2.2
5,233,307	-		Psyr_4377	0.46	+3.6
5,233,307	-		Psyr_4377	0.46	-0.0
5,233,307	-		Psyr_4377	0.46	-0.4
5,233,307	-		Psyr_4377	0.46	-0.2
5,233,307	-		Psyr_4377	0.46	-0.9
5,233,307	-		Psyr_4377	0.46	-2.5
5,233,307	-		Psyr_4377	0.46	-1.3
5,233,307	-		Psyr_4377	0.46	-0.7
5,233,307	-		Psyr_4377	0.46	+0.8
5,233,307	-		Psyr_4377	0.46	-0.9
5,233,307	-		Psyr_4377	0.46	+0.6
5,233,307	-		Psyr_4377	0.46	-2.5
5,233,307	-		Psyr_4377	0.46	-1.1
5,233,307	-		Psyr_4377	0.46	+0.8
5,233,307	-		Psyr_4377	0.46	-0.1
5,233,307	-		Psyr_4377	0.46	-0.9
5,233,307	-		Psyr_4377	0.46	+2.0
5,233,307	-		Psyr_4377	0.46	-0.4
5,233,307	-		Psyr_4377	0.46	+0.6
5,233,307	-		Psyr_4377	0.46	+0.5
5,233,307	-		Psyr_4377	0.46	-3.3
5,233,307	-		Psyr_4377	0.46	-0.5
5,233,307	-		Psyr_4377	0.46	-1.7
5,233,307	-		Psyr_4377	0.46	-1.9
5,233,307	-		Psyr_4377	0.46	-0.1
5,233,307	-		Psyr_4377	0.46	-0.9
5,233,307	-		Psyr_4377	0.46	+0.8
5,233,307	-		Psyr_4377	0.46	+1.5
5,233,307	-		Psyr_4377	0.46	-2.4
5,233,307	-		Psyr_4377	0.46	-1.4
5,233,307	-		Psyr_4377	0.46	-2.2
5,233,307	-		Psyr_4377	0.46	-0.5
5,233,307	-		Psyr_4377	0.46	-0.6
5,233,460	+		Psyr_4377	0.55	-0.8
5,233,460	+		Psyr_4377	0.55	+2.2
5,233,460	+		Psyr_4377	0.55	-2.0
5,233,460	+		Psyr_4377	0.55	-2.6
5,233,460	+		Psyr_4377	0.55	+0.3
5,233,460	+		Psyr_4377	0.55	-0.7
5,233,460	+		Psyr_4377	0.55	-0.6
5,233,460	+		Psyr_4377	0.55	-2.7
5,233,460	+		Psyr_4377	0.55	-0.6
5,233,460	+		Psyr_4377	0.55	-0.7
5,233,460	+		Psyr_4377	0.55	+3.2
5,233,461	-		Psyr_4377	0.55	+0.1
5,233,461	-		Psyr_4377	0.55	-2.6
5,233,461	-		Psyr_4377	0.55	-0.8
5,233,461	-		Psyr_4377	0.55	-2.1
5,233,461	-		Psyr_4377	0.55	-1.7
5,233,461	-		Psyr_4377	0.55	-1.0
5,233,461	-		Psyr_4377	0.55	+0.9
5,233,462	+		Psyr_4377	0.55	-0.6
5,233,463	-		Psyr_4377	0.55	-1.4
5,233,463	-		Psyr_4377	0.55	-1.0
5,233,827	+		Psyr_4377	0.77	-0.5
5,233,827	+		Psyr_4377	0.77	-1.5
5,233,827	+		Psyr_4377	0.77	-1.0
5,233,827	+		Psyr_4377	0.77	-0.3
5,233,827	+		Psyr_4377	0.77	-0.9
5,233,827	+		Psyr_4377	0.77	-2.0
5,233,827	+		Psyr_4377	0.77	-1.4
5,233,827	+		Psyr_4377	0.77	-2.0
5,233,827	+		Psyr_4377	0.77	-1.4
5,233,827	+		Psyr_4377	0.77	-1.3
5,233,827	+		Psyr_4377	0.77	-1.0
5,233,827	+		Psyr_4377	0.77	-1.3
5,233,827	+		Psyr_4377	0.77	-1.6
5,233,827	+		Psyr_4377	0.77	+1.3
5,233,828	-		Psyr_4377	0.77	-1.5
5,233,828	-		Psyr_4377	0.77	-3.3
5,233,828	-		Psyr_4377	0.77	+0.2
5,233,828	-		Psyr_4377	0.77	-2.2
5,233,828	-		Psyr_4377	0.77	-0.2
5,233,828	-		Psyr_4377	0.77	-1.8
5,233,828	-		Psyr_4377	0.77	+0.1
5,233,828	-		Psyr_4377	0.77	+0.0
5,233,828	-		Psyr_4377	0.77	-1.1
5,233,828	-		Psyr_4377	0.77	-1.3
5,233,828	-		Psyr_4377	0.77	+0.5
5,233,828	-		Psyr_4377	0.77	+0.7
5,233,828	-		Psyr_4377	0.77	-1.3
5,233,828	-		Psyr_4377	0.77	+0.3
5,233,828	-		Psyr_4377	0.77	-1.5
5,233,829	+		Psyr_4377	0.77	+1.7
5,233,829	+		Psyr_4377	0.77	+0.1
5,233,829	+		Psyr_4377	0.77	-1.5
5,233,829	+		Psyr_4377	0.77	-3.1
5,233,829	+		Psyr_4377	0.77	+0.3
5,233,829	+		Psyr_4377	0.77	+0.2
5,233,829	+		Psyr_4377	0.77	-1.9
5,233,829	+		Psyr_4377	0.77	+0.8
5,233,830	-		Psyr_4377	0.77	-0.7
5,233,830	-		Psyr_4377	0.77	-1.0
5,233,830	-		Psyr_4377	0.77	-0.5
5,233,830	-		Psyr_4377	0.77	-2.5
5,233,830	-		Psyr_4377	0.77	+0.6
5,233,830	-		Psyr_4377	0.77	-0.6
5,233,830	-		Psyr_4377	0.77	-3.0
5,233,830	-		Psyr_4377	0.77	-0.0
5,233,830	-		Psyr_4377	0.77	-1.4
5,233,831	+		Psyr_4377	0.77	-0.7
5,233,831	+		Psyr_4377	0.77	-0.7
5,233,831	+		Psyr_4377	0.77	-2.3
5,233,831	+		Psyr_4377	0.77	-0.1
5,233,831	+		Psyr_4377	0.77	-1.0
5,233,831	+		Psyr_4377	0.77	-1.7
5,233,831	+		Psyr_4377	0.77	-3.3
5,233,831	+		Psyr_4377	0.77	+0.5
5,233,832	-		Psyr_4377	0.77	+1.2
5,233,832	-		Psyr_4377	0.77	-0.7
5,233,832	-		Psyr_4377	0.77	-0.4
5,233,832	-		Psyr_4377	0.77	-1.5
5,233,832	-		Psyr_4377	0.77	-1.4
5,233,832	-		Psyr_4377	0.77	-0.3
5,233,832	-		Psyr_4377	0.77	-1.3
5,233,832	-		Psyr_4377	0.77	-1.2
5,233,832	-		Psyr_4377	0.77	+0.5
5,234,216	+				-0.0
5,234,217	-				-0.4
5,234,217	-				-0.2
5,234,257	+				-0.7
5,234,258	-				+1.7
5,234,269	+				-0.8
5,234,269	+				-0.8
5,234,270	-				+3.4
5,234,287	+				-0.1
5,234,288	-				+1.9
5,234,288	-				+1.0
5,234,296	+				-0.1
5,234,297	-				+1.2
5,234,360	+				+0.2
5,234,361	-				+1.8
5,234,380	+				-0.9
5,234,380	+				+0.6
5,234,388	+				-0.2
5,234,388	+				-0.9
5,234,388	+				+0.1
5,234,388	+				-0.6
5,234,389	-				-0.1
5,234,389	-				+0.4
5,234,389	-				-0.2
5,234,389	-				+0.1
5,234,389	-				+1.3
5,234,389	-				-0.2
5,234,414	+				-0.2
5,234,414	+				-0.4
5,234,414	+				+0.4
5,234,414	+				-0.8
5,234,468	+				-0.0
5,234,468	+				+0.4
5,234,469	-				+0.4
5,234,565	+				-1.2
5,234,565	+				+0.4
5,234,565	+				-0.2
5,234,565	+				-2.8
5,234,565	+				+0.9
5,234,565	+				+0.2
5,234,565	+				-1.9
5,234,565	+				-0.4
5,234,565	+				-0.5
5,234,566	-				+2.1
5,234,566	-				+0.5
5,234,566	-				+0.8
5,234,566	-				+0.0
5,234,566	-				+0.8
5,234,566	-				+1.3
5,234,566	-				+1.0
5,234,568	-				+1.1
5,234,598	+		Psyr_4378	0.12	+0.5
5,234,598	+		Psyr_4378	0.12	-0.2
5,234,598	+		Psyr_4378	0.12	-0.7
5,234,598	+		Psyr_4378	0.12	-0.9
5,234,598	+		Psyr_4378	0.12	+0.5
5,234,598	+		Psyr_4378	0.12	-2.7
5,234,598	+		Psyr_4378	0.12	-0.8
5,234,598	+		Psyr_4378	0.12	-0.7
5,234,598	+		Psyr_4378	0.12	-0.6
5,234,599	-		Psyr_4378	0.12	+0.0
5,234,599	-		Psyr_4378	0.12	+4.0
5,234,599	-		Psyr_4378	0.12	+3.1
5,234,775	+		Psyr_4378	0.28	-0.1
5,234,835	+		Psyr_4378	0.34	-1.4
5,235,070	-		Psyr_4378	0.55	+0.1