Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4057

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,838,681	+				-0.3
4,838,681	+				+0.2
4,838,682	-				+0.2
4,838,700	+		Psyr_4056	0.10	+0.3
4,838,751	+		Psyr_4056	0.15	+1.3
4,838,751	+		Psyr_4056	0.15	+1.2
4,838,752	-		Psyr_4056	0.15	-0.7
4,838,752	-		Psyr_4056	0.15	-1.0
4,838,752	-		Psyr_4056	0.15	-1.0
4,838,752	-		Psyr_4056	0.15	+1.5
4,838,752	-		Psyr_4056	0.15	+0.2
4,838,752	-		Psyr_4056	0.15	+0.1
4,838,810	+		Psyr_4056	0.21	+0.4
4,838,870	+		Psyr_4056	0.27	-1.1
4,838,870	+		Psyr_4056	0.27	+0.2
4,838,870	+		Psyr_4056	0.27	+1.1
4,838,870	+		Psyr_4056	0.27	+0.3
4,838,870	+		Psyr_4056	0.27	+4.7
4,838,870	+		Psyr_4056	0.27	+0.8
4,838,870	+				+0.3
4,838,870	+		Psyr_4056	0.27	+0.7
4,838,871	-		Psyr_4056	0.27	+2.1
4,838,871	-		Psyr_4056	0.27	-0.0
4,838,871	-		Psyr_4056	0.27	+0.3
4,838,871	-		Psyr_4056	0.27	+1.1
4,838,871	-		Psyr_4056	0.27	-0.0
4,838,871	-		Psyr_4056	0.27	-0.7
4,838,871	-		Psyr_4056	0.27	+0.5
4,838,871	-		Psyr_4056	0.27	+1.2
4,838,918	+		Psyr_4056	0.32	+0.5
4,838,918	+		Psyr_4056	0.32	-2.7
4,838,918	+		Psyr_4056	0.32	+1.1
4,838,918	+		Psyr_4056	0.32	+0.9
4,838,918	+		Psyr_4056	0.32	-0.6
4,838,918	+		Psyr_4056	0.32	-0.4
4,838,919	-		Psyr_4056	0.32	-0.8
4,838,919	-		Psyr_4056	0.32	+0.7
4,838,919	-		Psyr_4056	0.32	+1.2
4,838,919	-		Psyr_4056	0.32	-1.0
4,839,020	-		Psyr_4056	0.42	+0.0
4,839,020	-		Psyr_4056	0.42	-0.3
4,839,069	+		Psyr_4056	0.47	+0.9
4,839,069	+		Psyr_4056	0.47	+0.1
4,839,069	+		Psyr_4056	0.47	+0.9
4,839,069	+		Psyr_4056	0.47	-1.4
4,839,069	+		Psyr_4056	0.47	-0.3
4,839,069	+		Psyr_4056	0.47	-2.4
4,839,069	+		Psyr_4056	0.47	-1.4
4,839,069	+		Psyr_4056	0.47	-0.1
4,839,069	+		Psyr_4056	0.47	-1.1
4,839,069	+		Psyr_4056	0.47	-1.3
4,839,069	+		Psyr_4056	0.47	+0.1
4,839,070	-		Psyr_4056	0.47	+0.2
4,839,070	-		Psyr_4056	0.47	+1.6
4,839,070	-		Psyr_4056	0.47	-1.8
4,839,070	-		Psyr_4056	0.47	+0.2
4,839,070	-		Psyr_4056	0.47	-0.3
4,839,070	-		Psyr_4056	0.47	-2.3
4,839,070	-		Psyr_4056	0.47	+1.5
4,839,164	+		Psyr_4056	0.57	-0.5
4,839,164	+		Psyr_4056	0.57	-3.2
4,839,164	+		Psyr_4056	0.57	+0.6
4,839,165	-		Psyr_4056	0.57	-0.6
4,839,165	-		Psyr_4056	0.57	+0.3
4,839,165	-		Psyr_4056	0.57	+2.4
4,839,165	-		Psyr_4056	0.57	+0.5
4,839,165	-		Psyr_4056	0.57	+0.8
4,839,179	+		Psyr_4056	0.58	+1.0
4,839,245	+		Psyr_4056	0.65	+1.2
4,839,245	+		Psyr_4056	0.65	+1.0
4,839,245	+		Psyr_4056	0.65	+3.0
4,839,246	-		Psyr_4056	0.65	+1.3
4,839,594	-				+0.2
4,839,645	+				+2.8
4,839,645	+				+2.5
4,839,645	+				-0.3
4,839,645	+				+0.4
4,839,658	-				+0.4
4,839,766	+		Psyr_4057	0.11	-1.7
4,839,766	+		Psyr_4057	0.11	-0.9
4,839,766	+		Psyr_4057	0.11	-0.2
4,839,782	+		Psyr_4057	0.13	-0.5
4,839,783	-		Psyr_4057	0.13	+0.6
4,839,783	-		Psyr_4057	0.13	-1.6
4,839,882	-		Psyr_4057	0.24	-1.4
4,839,953	-		Psyr_4057	0.32	-0.8
4,840,555	+				-0.3
4,840,605	+				-0.8
4,840,656	+				-0.3
4,840,656	+				-0.3
4,840,656	+				-0.2
4,840,656	+				-1.0
4,840,656	+				-1.4
4,840,656	+				-0.6
4,840,656	+				-0.7
4,840,656	+				-2.2
4,840,656	+				+0.5
4,840,656	+				-0.1
4,840,656	+				-0.3
4,840,656	+				-1.9
4,840,656	+				+0.1
4,840,657	-				-0.1
4,840,657	-				-0.5
4,840,657	-				-1.1
4,840,657	-				-0.2
4,840,657	-				-0.3
4,840,657	-				-0.9
4,840,657	-				-2.1
4,840,657	-				+0.1
4,840,657	-				-0.8
4,840,657	-				+0.5
4,840,657	-				-1.7
4,840,657	-				+0.2
4,840,657	-				-1.5
4,840,660	+				-2.0
4,840,660	+				-0.9
4,840,660	+				-1.0
4,840,660	+				-0.6
4,840,660	+				-1.4
4,840,660	+				+0.2
4,840,660	+				-1.6
4,840,660	+				-0.6
4,840,660	+				-2.5
4,840,660	+				+0.5
4,840,660	+				-2.4
4,840,660	+				-1.1
4,840,660	+				-0.0
4,840,661	-				-0.6
4,840,661	-				-0.3
4,840,661	-				-1.9
4,840,661	-				-1.6
4,840,661	-				-0.4
4,840,661	-				-1.9
4,840,661	-				-0.3
4,840,661	-				-1.1
4,840,661	-				-0.9
4,840,661	-				-0.1
4,840,674	-				-1.1
4,840,674	-				+0.3
4,840,674	-				-1.1
4,840,674	-				+0.4
4,840,792	+		Psyr_4058	0.22	-0.2
4,840,793	-		Psyr_4058	0.22	-0.1
4,840,893	+		Psyr_4058	0.38	-0.1
4,840,894	-		Psyr_4058	0.39	+0.5
4,840,894	-		Psyr_4058	0.39	-1.7
4,840,894	-		Psyr_4058	0.39	+1.5
4,840,907	+		Psyr_4058	0.41	+2.2
4,841,036	+		Psyr_4058	0.62	-0.1
4,841,036	+		Psyr_4058	0.62	-0.9
4,841,036	+		Psyr_4058	0.62	-1.3
4,841,037	-		Psyr_4058	0.62	-0.5
4,841,037	-		Psyr_4058	0.62	-0.4
4,841,037	-		Psyr_4058	0.62	+0.1
4,841,037	-		Psyr_4058	0.62	-0.3
4,841,037	-		Psyr_4058	0.62	-0.8
4,841,037	-		Psyr_4058	0.62	-0.8
4,841,037	-		Psyr_4058	0.62	-0.5
4,841,037	-		Psyr_4058	0.62	-0.3
4,841,049	+		Psyr_4058	0.64	+1.0
4,841,049	+		Psyr_4058	0.64	+1.1
4,841,049	+		Psyr_4058	0.64	+0.3
4,841,052	+		Psyr_4058	0.65	+0.1
4,841,052	+		Psyr_4058	0.65	-0.1
4,841,053	-		Psyr_4058	0.65	+0.1
4,841,053	-		Psyr_4058	0.65	-3.1
4,841,053	-		Psyr_4058	0.65	-1.5
4,841,096	+		Psyr_4058	0.72	+0.5
4,841,097	-		Psyr_4058	0.72	-0.2
4,841,097	-		Psyr_4058	0.72	-0.4
4,841,100	+		Psyr_4058	0.73	-1.1
4,841,100	+		Psyr_4058	0.73	-0.5
4,841,100	+		Psyr_4058	0.73	-0.5
4,841,100	+		Psyr_4058	0.73	-1.3
4,841,100	+		Psyr_4058	0.73	+0.0
4,841,101	-		Psyr_4058	0.73	-0.2
4,841,101	-		Psyr_4058	0.73	-0.5
4,841,101	-		Psyr_4058	0.73	-1.7
4,841,101	-		Psyr_4058	0.73	-0.7
4,841,101	-		Psyr_4058	0.73	-0.9
4,841,101	-		Psyr_4058	0.73	+0.0
4,841,101	-		Psyr_4058	0.73	-1.3
4,841,345	+				+0.5
4,841,345	+				+0.4
4,841,345	+				-0.1
4,841,345	+				+0.3
4,841,345	+				+0.2
4,841,345	+				+0.1
4,841,346	-				+1.7
4,841,346	-				-0.3
4,841,346	-				+0.7
4,841,347	+				-1.3
4,841,347	+				+0.0
4,841,347	+				+0.5
4,841,374	+				+0.3
4,841,374	+				-0.1
4,841,395	+				-0.5
4,841,395	+				-1.1
4,841,396	-				-1.2