Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3996

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,756,465	+		Psyr_3995	0.52	-0.0
4,756,465	+		Psyr_3995	0.52	+0.4
4,756,466	-		Psyr_3995	0.52	+0.3
4,756,466	-		Psyr_3995	0.52	-0.6
4,756,466	-		Psyr_3995	0.52	-1.4
4,756,673	-		Psyr_3995	0.68	-0.5
4,756,914	+		Psyr_3995	0.86	-0.4
4,756,914	+		Psyr_3995	0.86	+0.0
4,756,995	+				+0.4
4,756,996	-				-0.6
4,757,169	+				+1.9
4,757,170	-				+1.7
4,757,170	-				+0.2
4,757,170	-				-0.5
4,757,182	+				+0.7
4,757,182	+				-1.1
4,757,183	-				+0.1
4,757,183	-				-0.3
4,757,184	+				-1.0
4,757,184	+				-1.4
4,757,185	-				-0.3
4,757,185	-				-0.3
4,757,185	-				+1.0
4,757,185	-				-0.2
4,757,210	+				+1.7
4,757,210	+				+0.2
4,757,210	+				-0.3
4,757,293	-				-0.2
4,757,376	+				+0.8
4,757,376	+				+1.8
4,757,376	+				+0.9
4,757,376	+				-0.3
4,757,376	+				+0.5
4,757,376	+				-0.3
4,757,377	-				-0.6
4,757,377	-				+2.0
4,757,377	-				+0.9
4,757,377	-				-0.0
4,757,443	+				+0.2
4,757,443	+				+0.7
4,757,443	+				+0.2
4,757,443	+				+0.3
4,757,444	-				+2.9
4,757,444	-				+0.6
4,757,444	-				+0.0
4,757,444	-				+0.0
4,757,444	-				-0.1
4,757,444	-				+0.2
4,757,444	-				+0.9
4,757,444	-				+0.8
4,757,444	-				-0.3
4,757,444	-				-0.0
4,757,444	-				-1.0
4,757,488	+				-0.6
4,757,488	+				-0.3
4,757,693	-		Psyr_3996	0.15	+0.4
4,758,366	+		Psyr_3996	0.43	+2.0
4,758,366	+		Psyr_3996	0.43	+0.7
4,758,366	+		Psyr_3996	0.43	+0.3
4,758,366	+		Psyr_3996	0.43	+0.2
4,758,366	+		Psyr_3996	0.43	-1.8
4,758,366	+		Psyr_3996	0.43	+2.9
4,758,367	-		Psyr_3996	0.44	-0.9
4,758,367	-		Psyr_3996	0.44	+2.3
4,758,367	-		Psyr_3996	0.44	-0.1
4,758,600	+		Psyr_3996	0.53	+0.0
4,758,601	-		Psyr_3996	0.53	+0.6
4,758,703	+		Psyr_3996	0.58	-0.0
4,758,703	+		Psyr_3996	0.58	-1.1
4,758,704	-		Psyr_3996	0.58	+0.6
4,758,704	-		Psyr_3996	0.58	+0.9
4,758,704	-		Psyr_3996	0.58	-0.6
4,758,704	-		Psyr_3996	0.58	-0.4
4,759,054	+		Psyr_3996	0.72	-0.4
4,759,054	+		Psyr_3996	0.72	-0.7
4,759,054	+		Psyr_3996	0.72	-1.1
4,759,054	+		Psyr_3996	0.72	+0.7
4,759,054	+		Psyr_3996	0.72	-0.2
4,759,054	+		Psyr_3996	0.72	+1.0
4,759,054	+		Psyr_3996	0.72	+0.8
4,759,054	+		Psyr_3996	0.72	-2.8
4,759,054	+		Psyr_3996	0.72	+0.6
4,759,054	+		Psyr_3996	0.72	+0.6
4,759,054	+		Psyr_3996	0.72	-1.3
4,759,055	-		Psyr_3996	0.72	-1.5
4,759,055	-		Psyr_3996	0.72	+1.3
4,759,055	-		Psyr_3996	0.72	-0.7
4,759,055	-		Psyr_3996	0.72	+0.1
4,759,055	-		Psyr_3996	0.72	+0.2
4,759,055	-		Psyr_3996	0.72	+0.4
4,759,055	-		Psyr_3996	0.72	+0.2
4,759,055	-		Psyr_3996	0.72	-1.0
4,759,055	-		Psyr_3996	0.72	-1.8
4,759,055	-		Psyr_3996	0.72	-1.2
4,759,055	-		Psyr_3996	0.72	-1.2
4,759,056	+		Psyr_3996	0.72	-0.7
4,759,056	+		Psyr_3996	0.72	+0.4
4,759,056	+		Psyr_3996	0.72	-0.6
4,759,057	-		Psyr_3996	0.72	+1.1
4,759,057	-		Psyr_3996	0.72	-0.7
4,759,057	-		Psyr_3996	0.72	-0.8
4,759,057	-		Psyr_3996	0.72	-0.9
4,759,057	-		Psyr_3996	0.72	-0.1
4,759,057	-		Psyr_3996	0.72	-2.2
4,759,057	-		Psyr_3996	0.72	-0.6
4,759,058	+		Psyr_3996	0.72	+1.4
4,759,058	+		Psyr_3996	0.72	-0.8
4,759,058	+		Psyr_3996	0.72	-1.9
4,759,058	+		Psyr_3996	0.72	-0.1
4,759,058	+		Psyr_3996	0.72	-0.5
4,759,058	+		Psyr_3996	0.72	-0.7
4,759,058	+		Psyr_3996	0.72	-0.1
4,759,058	+		Psyr_3996	0.72	+1.5
4,759,058	+		Psyr_3996	0.72	+0.1
4,759,059	-		Psyr_3996	0.72	+0.1
4,759,059	-		Psyr_3996	0.72	-0.0
4,759,059	-		Psyr_3996	0.72	-0.4
4,759,059	-		Psyr_3996	0.72	-0.1
4,759,059	-		Psyr_3996	0.72	-1.2
4,759,059	-		Psyr_3996	0.72	+0.1
4,759,059	-		Psyr_3996	0.72	-0.5
4,759,059	-		Psyr_3996	0.72	-0.3
4,759,059	-		Psyr_3996	0.72	+0.7
4,759,059	-		Psyr_3996	0.72	+0.4
4,759,059	-		Psyr_3996	0.72	-0.4
4,759,059	-		Psyr_3996	0.72	-0.3
4,759,069	+		Psyr_3996	0.73	-2.5
4,759,069	+		Psyr_3996	0.73	-2.2
4,759,069	+		Psyr_3996	0.73	-1.0
4,759,069	+		Psyr_3996	0.73	+0.4
4,759,069	+		Psyr_3996	0.73	-0.7
4,759,069	+		Psyr_3996	0.73	-1.9
4,759,070	-		Psyr_3996	0.73	-1.7
4,759,070	-		Psyr_3996	0.73	+1.2
4,759,070	-		Psyr_3996	0.73	-0.4
4,759,070	-		Psyr_3996	0.73	+0.4
4,759,070	-		Psyr_3996	0.73	-0.2
4,759,070	-		Psyr_3996	0.73	-0.6
4,759,070	-		Psyr_3996	0.73	-0.9
4,759,073	+		Psyr_3996	0.73	+0.2
4,759,073	+		Psyr_3996	0.73	-0.4
4,759,073	+		Psyr_3996	0.73	+0.3
4,759,073	+		Psyr_3996	0.73	+0.7
4,759,073	+		Psyr_3996	0.73	-1.1
4,759,073	+		Psyr_3996	0.73	+2.0
4,759,073	+		Psyr_3996	0.73	-2.5
4,759,073	+		Psyr_3996	0.73	-1.6
4,759,073	+		Psyr_3996	0.73	-0.9
4,759,074	-		Psyr_3996	0.73	+0.2
4,759,074	-		Psyr_3996	0.73	-0.4
4,759,074	-		Psyr_3996	0.73	+0.0
4,759,074	-		Psyr_3996	0.73	-1.5
4,759,074	-		Psyr_3996	0.73	-0.1
4,759,074	-		Psyr_3996	0.73	-1.1
4,759,074	-		Psyr_3996	0.73	-1.1
4,759,074	-		Psyr_3996	0.73	-0.1
4,759,074	-		Psyr_3996	0.73	-0.4
4,759,144	+		Psyr_3996	0.76	-0.4
4,759,144	+		Psyr_3996	0.76	-2.1
4,759,144	+				-0.5
4,759,144	+		Psyr_3996	0.76	+0.6
4,759,144	+		Psyr_3996	0.76	-0.4
4,759,144	+		Psyr_3996	0.76	-0.2
4,759,144	+		Psyr_3996	0.76	-0.7
4,759,144	+		Psyr_3996	0.76	-0.0
4,759,144	+		Psyr_3996	0.76	+1.6
4,759,144	+		Psyr_3996	0.76	-1.5
4,759,144	+		Psyr_3996	0.76	+0.6
4,759,145	-		Psyr_3996	0.76	-2.4
4,759,145	-		Psyr_3996	0.76	+0.7
4,759,145	-		Psyr_3996	0.76	+2.2
4,759,145	-		Psyr_3996	0.76	+0.3
4,759,146	+		Psyr_3996	0.76	-0.5
4,759,146	+		Psyr_3996	0.76	+1.3
4,759,147	-		Psyr_3996	0.76	-1.4
4,759,194	-		Psyr_3996	0.78	-0.1
4,759,384	+		Psyr_3996	0.86	-0.6
4,759,384	+		Psyr_3996	0.86	-0.1
4,759,384	+		Psyr_3996	0.86	+0.1
4,759,384	+		Psyr_3996	0.86	-0.3
4,759,384	+		Psyr_3996	0.86	-0.5
4,759,384	+		Psyr_3996	0.86	-0.8
4,759,385	-		Psyr_3996	0.86	+0.7
4,759,385	-		Psyr_3996	0.86	-1.3
4,759,385	-		Psyr_3996	0.86	-0.3
4,759,385	-		Psyr_3996	0.86	-2.1
4,759,385	-		Psyr_3996	0.86	-0.3
4,759,385	-		Psyr_3996	0.86	-0.5
4,759,534	+				+0.8
4,759,535	-				-0.7
4,759,535	-				+0.5
4,759,654	+				+0.4
4,759,768	+				+0.9
4,759,801	+				-2.6
4,759,801	+				+0.2
4,759,802	-				+0.6
4,759,861	+				-0.7
4,759,861	+				+0.4
4,759,861	+				-1.4
4,759,981	+				+1.9
4,759,982	-				+0.9
4,760,090	+		Psyr_3997	0.12	+0.8
4,760,090	+		Psyr_3997	0.12	-0.5
4,760,091	-		Psyr_3997	0.12	+0.0
4,760,128	+		Psyr_3997	0.14	-0.1
4,760,129	-		Psyr_3997	0.15	-0.0
4,760,132	+		Psyr_3997	0.15	+0.2
4,760,220	+		Psyr_3997	0.20	-0.9
4,760,257	+		Psyr_3997	0.22	-0.1
4,760,269	+		Psyr_3997	0.23	+0.1
4,760,269	+		Psyr_3997	0.23	-0.2
4,760,270	-		Psyr_3997	0.23	+1.3
4,760,340	-		Psyr_3997	0.27	-0.2
4,760,445	+		Psyr_3997	0.33	+0.9
4,760,445	+		Psyr_3997	0.33	-0.5
4,760,445	+		Psyr_3997	0.33	-0.9
4,760,446	-		Psyr_3997	0.33	+1.0
4,760,446	-		Psyr_3997	0.33	-0.3
4,760,446	-		Psyr_3997	0.33	-0.1
4,760,446	-		Psyr_3997	0.33	-1.6
4,760,631	+		Psyr_3997	0.44	-0.4
4,760,632	-		Psyr_3997	0.44	-1.2
4,760,669	-		Psyr_3997	0.46	-0.2
4,760,669	-		Psyr_3997	0.46	+2.4