Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3538

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,215,239	-				+0.1
4,215,285	+				-0.2
4,215,311	-		Psyr_3537	0.13	-2.2
4,215,417	-		Psyr_3537	0.25	-0.4
4,215,472	+		Psyr_3537	0.32	+4.4
4,215,472	+		Psyr_3537	0.32	-1.4
4,215,472	+		Psyr_3537	0.32	+1.8
4,215,473	-		Psyr_3537	0.32	-0.5
4,215,511	+		Psyr_3537	0.36	-1.0
4,215,511	+		Psyr_3537	0.36	-0.7
4,215,511	+		Psyr_3537	0.36	+1.0
4,215,511	+		Psyr_3537	0.36	+0.0
4,215,511	+		Psyr_3537	0.36	-0.1
4,215,512	-		Psyr_3537	0.36	+0.2
4,215,522	+		Psyr_3537	0.37	+0.3
4,215,523	-		Psyr_3537	0.38	+2.4
4,215,523	-		Psyr_3537	0.38	+0.2
4,215,523	-		Psyr_3537	0.38	-0.5
4,215,523	-		Psyr_3537	0.38	-0.8
4,215,681	+		Psyr_3537	0.56	+1.9
4,215,681	+		Psyr_3537	0.56	-0.2
4,215,681	+		Psyr_3537	0.56	-2.4
4,215,681	+		Psyr_3537	0.56	+1.3
4,215,682	-		Psyr_3537	0.56	+1.1
4,215,682	-		Psyr_3537	0.56	+1.6
4,215,682	-		Psyr_3537	0.56	+0.1
4,215,682	-		Psyr_3537	0.56	+0.0
4,215,788	+		Psyr_3537	0.68	-0.2
4,215,818	+		Psyr_3537	0.72	-0.9
4,215,818	+		Psyr_3537	0.72	-1.0
4,215,818	+		Psyr_3537	0.72	+0.1
4,215,818	+		Psyr_3537	0.72	+1.7
4,215,819	-		Psyr_3537	0.72	-0.1
4,215,819	-		Psyr_3537	0.72	-0.5
4,215,819	-		Psyr_3537	0.72	+1.5
4,215,848	+		Psyr_3537	0.75	-0.3
4,215,848	+		Psyr_3537	0.75	+0.8
4,215,848	+		Psyr_3537	0.75	+0.9
4,215,848	+		Psyr_3537	0.75	+1.3
4,215,848	+		Psyr_3537	0.75	-0.6
4,215,848	+		Psyr_3537	0.75	-0.2
4,215,848	+		Psyr_3537	0.75	-0.1
4,215,848	+		Psyr_3537	0.75	+0.5
4,215,848	+		Psyr_3537	0.75	-0.8
4,215,848	+		Psyr_3537	0.75	-1.4
4,215,848	+		Psyr_3537	0.75	+0.8
4,215,848	+		Psyr_3537	0.75	+0.2
4,215,848	+		Psyr_3537	0.75	-0.9
4,215,848	+		Psyr_3537	0.75	+0.8
4,215,848	+		Psyr_3537	0.75	+0.2
4,215,848	+		Psyr_3537	0.75	-1.4
4,215,849	-		Psyr_3537	0.75	-0.1
4,215,849	-		Psyr_3537	0.75	+0.8
4,215,849	-		Psyr_3537	0.75	+0.2
4,215,849	-		Psyr_3537	0.75	+0.4
4,215,849	-		Psyr_3537	0.75	-0.4
4,215,849	-		Psyr_3537	0.75	-0.5
4,215,849	-		Psyr_3537	0.75	+0.6
4,215,849	-		Psyr_3537	0.75	+0.3
4,215,849	-		Psyr_3537	0.75	+0.2
4,215,849	-		Psyr_3537	0.75	-1.0
4,215,849	-		Psyr_3537	0.75	-0.5
4,215,849	-		Psyr_3537	0.75	+1.1
4,215,971	+		Psyr_3537	0.89	-0.3
4,216,034	-				+1.9
4,216,100	+				+0.4
4,216,150	+				+0.1
4,216,150	+				+0.8
4,216,151	-				+0.1
4,216,167	+				+0.7
4,216,167	+				+0.5
4,216,177	+				-0.9
4,216,177	+				+0.0
4,216,177	+				+1.9
4,216,177	+				+0.3
4,216,177	+				+1.0
4,216,178	-				+0.2
4,216,178	-				+0.6
4,216,178	-				+0.9
4,216,178	-				-0.6
4,216,178	-				+1.5
4,216,178	-				-0.1
4,216,178	-				-0.4
4,216,178	-				+1.0
4,216,178	-				-0.7
4,216,178	-				+1.6
4,216,178	-				+0.0
4,216,178	-				+0.8
4,216,207	+				-0.5
4,216,207	+				+0.2
4,216,207	+				+0.9
4,216,208	-				+1.3
4,216,387	+		Psyr_3538	0.34	+0.3
4,216,388	-		Psyr_3538	0.34	-0.8
4,216,388	-		Psyr_3538	0.34	+0.2
4,216,462	+		Psyr_3538	0.47	+0.3
4,216,462	+		Psyr_3538	0.47	-2.1
4,216,463	-		Psyr_3538	0.47	-0.9
4,216,463	-		Psyr_3538	0.47	+0.3
4,216,463	-		Psyr_3538	0.47	-0.4
4,216,466	+		Psyr_3538	0.47	-0.3
4,216,466	+		Psyr_3538	0.47	+0.1
4,216,466	+		Psyr_3538	0.47	-0.8
4,216,466	+		Psyr_3538	0.47	+1.3
4,216,467	-		Psyr_3538	0.48	-0.1
4,216,467	-		Psyr_3538	0.48	+1.6
4,216,467	-		Psyr_3538	0.48	-1.1
4,216,467	-		Psyr_3538	0.48	-0.4
4,216,467	-		Psyr_3538	0.48	+0.1
4,216,520	+		Psyr_3538	0.56	+1.0
4,216,520	+		Psyr_3538	0.56	+1.9
4,216,521	-		Psyr_3538	0.57	+0.7
4,216,545	+		Psyr_3538	0.61	-0.4
4,216,545	+		Psyr_3538	0.61	-0.4
4,216,545	+		Psyr_3538	0.61	-1.0
4,216,546	-		Psyr_3538	0.61	-0.8
4,216,546	-		Psyr_3538	0.61	+2.0
4,216,560	+		Psyr_3538	0.63	-1.6
4,216,561	-		Psyr_3538	0.63	+0.7
4,216,561	-		Psyr_3538	0.63	-0.5
4,216,610	-		Psyr_3538	0.71	-0.6
4,216,691	+		Psyr_3538	0.85	+0.6
4,216,792	+				-0.1
4,217,022	+				+0.3
4,217,023	-				-0.8
4,217,023	-				-0.9
4,217,028	+				+0.4
4,217,028	+				+0.4
4,217,028	+				-0.7
4,217,028	+				-2.3
4,217,028	+				-0.1
4,217,028	+				+0.2
4,217,029	-				+1.1
4,217,029	-				-1.6
4,217,029	-				-1.4
4,217,029	-				-0.9
4,217,029	-				-1.0
4,217,029	-				+0.8
4,217,029	-				-2.2
4,217,093	+				-0.6
4,217,093	+				-0.7
4,217,093	+				+0.1
4,217,093	+				-0.2
4,217,093	+				+1.8
4,217,094	-				+0.1
4,217,094	-				-2.2
4,217,094	-				-1.6
4,217,094	-				-0.1
4,217,095	+				-0.1
4,217,095	+				+0.8
4,217,096	-				-0.6
4,217,096	-				+1.7
4,217,096	-				-0.1
4,217,096	-				-0.6
4,217,096	-				+1.0
4,217,512	+		Psyr_3539	0.60	+0.8
4,217,512	+		Psyr_3539	0.60	+1.8
4,217,512	+		Psyr_3539	0.60	-0.1
4,217,512	+		Psyr_3539	0.60	+0.1
4,217,513	-		Psyr_3539	0.60	+0.0
4,217,513	-		Psyr_3539	0.60	+3.4
4,217,513	-		Psyr_3539	0.60	+0.0
4,217,513	-		Psyr_3539	0.60	+1.5
4,217,513	-		Psyr_3539	0.60	+1.3
4,217,513	-		Psyr_3539	0.60	-0.1
4,217,513	-		Psyr_3539	0.60	+0.1
4,217,513	-		Psyr_3539	0.60	-0.9
4,217,565	-		Psyr_3539	0.67	-1.0
4,217,566	+		Psyr_3539	0.67	+1.5
4,217,566	+		Psyr_3539	0.67	-0.7
4,217,566	+		Psyr_3539	0.67	-0.6
4,217,566	+		Psyr_3539	0.67	-0.1
4,217,566	+		Psyr_3539	0.67	+0.5
4,217,566	+		Psyr_3539	0.67	+0.5
4,217,567	-		Psyr_3539	0.67	+0.6
4,217,567	-		Psyr_3539	0.67	+1.2
4,217,567	-		Psyr_3539	0.67	+0.3
4,217,567	-		Psyr_3539	0.67	+0.2
4,217,567	-		Psyr_3539	0.67	-0.4
4,217,567	-		Psyr_3539	0.67	+0.4
4,217,567	-		Psyr_3539	0.67	+0.9
4,217,567	-		Psyr_3539	0.67	+1.7
4,217,567	-		Psyr_3539	0.67	-0.4
4,217,567	-		Psyr_3539	0.67	-1.4
4,217,567	-		Psyr_3539	0.67	-1.1
4,217,567	-		Psyr_3539	0.67	+2.4
4,217,637	+		Psyr_3539	0.76	+1.2
4,217,637	+		Psyr_3539	0.76	-1.1
4,217,637	+		Psyr_3539	0.76	-0.4
4,217,637	+		Psyr_3539	0.76	+0.9
4,217,638	-		Psyr_3539	0.76	+0.6
4,217,638	-		Psyr_3539	0.76	+0.0