Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1302

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,471,181	-				+1.5
1,471,181	-				+1.5
1,471,364	+				-0.3
1,471,364	+				+0.7
1,471,364	+				-0.5
1,471,365	-				+0.7
1,471,383	-				-0.5
1,471,518	-		Psyr_1301	0.19	-0.1
1,471,518	-		Psyr_1301	0.19	+0.6
1,471,651	-		Psyr_1301	0.37	+0.3
1,471,683	+		Psyr_1301	0.41	+0.0
1,471,683	+		Psyr_1301	0.41	+1.9
1,471,684	-		Psyr_1301	0.41	-0.0
1,471,692	+		Psyr_1301	0.42	-1.2
1,471,692	+		Psyr_1301	0.42	-1.5
1,471,692	+		Psyr_1301	0.42	-3.3
1,471,693	-		Psyr_1301	0.42	+0.4
1,471,782	-		Psyr_1301	0.54	-1.7
1,471,989	+		Psyr_1301	0.82	-1.4
1,471,989	+		Psyr_1301	0.82	+1.0
1,471,989	+		Psyr_1301	0.82	+1.1
1,471,989	+		Psyr_1301	0.82	-0.9
1,471,989	+		Psyr_1301	0.82	-1.1
1,471,989	+		Psyr_1301	0.82	+1.3
1,471,989	+		Psyr_1301	0.82	-1.9
1,471,989	+		Psyr_1301	0.82	-0.3
1,471,989	+				+0.7
1,471,989	+		Psyr_1301	0.82	-0.9
1,471,989	+		Psyr_1301	0.82	+0.8
1,471,989	+		Psyr_1301	0.82	-0.3
1,471,989	+		Psyr_1301	0.82	+2.0
1,471,989	+		Psyr_1301	0.82	-0.1
1,471,989	+		Psyr_1301	0.82	-0.7
1,471,989	+		Psyr_1301	0.82	+0.6
1,471,989	+				+0.5
1,471,990	-		Psyr_1301	0.82	+0.1
1,471,990	-		Psyr_1301	0.82	+1.1
1,471,990	-		Psyr_1301	0.82	+1.9
1,471,990	-		Psyr_1301	0.82	+0.8
1,471,990	-		Psyr_1301	0.82	-0.4
1,471,990	-		Psyr_1301	0.82	+0.3
1,471,990	-		Psyr_1301	0.82	+0.3
1,471,990	-		Psyr_1301	0.82	+4.4
1,471,990	-		Psyr_1301	0.82	-1.5
1,471,990	-		Psyr_1301	0.82	-0.3
1,471,990	-		Psyr_1301	0.82	-0.5
1,471,990	-		Psyr_1301	0.82	+1.7
1,472,040	+		Psyr_1301	0.89	+2.8
1,472,279	-				+0.2
1,472,347	+				+0.9
1,472,347	+				+1.4
1,472,395	+				-1.1
1,472,396	-				-0.2
1,472,396	-				-0.9
1,472,583	+				-1.8
1,472,669	-				-0.7
1,472,813	+		Psyr_1302	0.11	-0.5
1,472,813	+		Psyr_1302	0.11	-1.6
1,473,088	+		Psyr_1302	0.15	-1.8
1,473,089	-		Psyr_1302	0.15	-0.2
1,473,097	+		Psyr_1302	0.15	+0.5
1,473,246	+		Psyr_1302	0.18	+1.0
1,473,247	-		Psyr_1302	0.18	+0.0
1,473,247	-		Psyr_1302	0.18	-2.0
1,473,285	+		Psyr_1302	0.18	+0.0
1,473,285	+		Psyr_1302	0.18	-0.4
1,473,285	+		Psyr_1302	0.18	+0.9
1,473,285	+		Psyr_1302	0.18	+2.6
1,473,286	-		Psyr_1302	0.18	-0.3
1,473,286	-		Psyr_1302	0.18	+0.8
1,473,525	+		Psyr_1302	0.23	-1.7
1,473,622	-		Psyr_1302	0.24	-1.0
1,473,622	-		Psyr_1302	0.24	-1.4
1,473,622	-		Psyr_1302	0.24	+0.8
1,473,707	-		Psyr_1302	0.26	-1.1
1,473,712	-		Psyr_1302	0.26	+2.1
1,473,922	-		Psyr_1302	0.29	-2.4
1,473,922	-		Psyr_1302	0.29	+0.3
1,474,022	+		Psyr_1302	0.31	+1.3
1,474,022	+		Psyr_1302	0.31	-1.9
1,474,022	+		Psyr_1302	0.31	+0.0
1,474,022	+		Psyr_1302	0.31	-1.3
1,474,032	+		Psyr_1302	0.31	-1.0
1,474,033	-		Psyr_1302	0.31	-0.3
1,474,033	-		Psyr_1302	0.31	-0.4
1,474,033	-		Psyr_1302	0.31	-0.9
1,474,056	-		Psyr_1302	0.31	-1.1
1,474,552	-		Psyr_1302	0.40	-2.0
1,474,552	-		Psyr_1302	0.40	+1.0
1,474,552	-		Psyr_1302	0.40	-3.2
1,474,572	-		Psyr_1302	0.40	-1.9
1,474,572	-		Psyr_1302	0.40	-0.4
1,474,572	-		Psyr_1302	0.40	+1.4
1,474,695	+		Psyr_1302	0.42	+0.6
1,474,695	+		Psyr_1302	0.42	+1.8
1,474,695	+		Psyr_1302	0.42	+0.3
1,474,695	+		Psyr_1302	0.42	+0.6
1,474,717	-		Psyr_1302	0.42	-1.3
1,474,784	+		Psyr_1302	0.44	+0.4
1,474,785	-		Psyr_1302	0.44	+1.2
1,474,822	+		Psyr_1302	0.44	-0.9
1,474,823	-		Psyr_1302	0.44	+2.5
1,475,233	+		Psyr_1302	0.51	-0.5
1,475,233	+		Psyr_1302	0.51	+1.3
1,475,233	+		Psyr_1302	0.51	-3.4
1,475,234	-		Psyr_1302	0.51	-0.5
1,475,234	-		Psyr_1302	0.51	+0.6
1,475,291	+		Psyr_1302	0.52	+1.4
1,475,483	-		Psyr_1302	0.55	+0.5
1,475,508	+		Psyr_1302	0.56	-0.6
1,475,509	-		Psyr_1302	0.56	-0.6
1,475,509	-		Psyr_1302	0.56	+0.7
1,475,509	-		Psyr_1302	0.56	+1.1
1,475,512	+		Psyr_1302	0.56	+1.1
1,475,745	+		Psyr_1302	0.60	+0.1
1,475,811	+		Psyr_1302	0.61	-0.0
1,475,811	+		Psyr_1302	0.61	-0.7
1,475,812	-		Psyr_1302	0.61	-0.6
1,475,812	-		Psyr_1302	0.61	+1.3
1,475,812	-		Psyr_1302	0.61	+0.4
1,475,812	-		Psyr_1302	0.61	-1.4
1,476,027	+		Psyr_1302	0.64	+0.7
1,476,027	+		Psyr_1302	0.64	-2.0
1,476,027	+		Psyr_1302	0.64	-1.0
1,476,027	+		Psyr_1302	0.64	-1.6
1,476,028	-		Psyr_1302	0.64	-0.2
1,476,028	-		Psyr_1302	0.64	+0.4
1,476,028	-		Psyr_1302	0.64	-0.1
1,476,028	-		Psyr_1302	0.64	+0.2
1,476,028	-		Psyr_1302	0.64	-1.9
1,476,030	-		Psyr_1302	0.64	+1.4
1,476,030	-		Psyr_1302	0.64	+0.3
1,476,206	+		Psyr_1302	0.67	+0.0
1,476,217	+		Psyr_1302	0.68	-0.0
1,476,218	-		Psyr_1302	0.68	-0.2
1,476,382	+		Psyr_1302	0.70	+1.5
1,476,383	-		Psyr_1302	0.70	-0.5
1,476,427	+		Psyr_1302	0.71	-1.2
1,476,427	+		Psyr_1302	0.71	+0.6
1,476,427	+		Psyr_1302	0.71	-0.3
1,476,427	+		Psyr_1302	0.71	+5.7
1,476,428	-		Psyr_1302	0.71	-0.4
1,476,428	-		Psyr_1302	0.71	+0.7
1,476,437	+		Psyr_1302	0.71	+1.0
1,476,438	-		Psyr_1302	0.71	+0.2
1,476,526	-		Psyr_1302	0.73	+0.1
1,476,650	-		Psyr_1302	0.75	+0.0
1,476,700	+		Psyr_1302	0.76	+1.0
1,476,701	-		Psyr_1302	0.76	+0.4
1,476,701	-		Psyr_1302	0.76	-1.2
1,476,701	-		Psyr_1302	0.76	+1.1
1,476,701	-		Psyr_1302	0.76	+0.6
1,476,701	-		Psyr_1302	0.76	+0.8
1,476,701	-		Psyr_1302	0.76	-0.0
1,476,701	-		Psyr_1302	0.76	+0.5
1,476,701	-		Psyr_1302	0.76	+0.5
1,476,701	-		Psyr_1302	0.76	+1.2
1,476,776	+		Psyr_1302	0.77	-0.8
1,476,808	+		Psyr_1302	0.77	+0.3
1,476,808	+		Psyr_1302	0.77	-0.8
1,476,809	-		Psyr_1302	0.77	+0.3
1,476,809	-		Psyr_1302	0.77	-2.4
1,476,809	-		Psyr_1302	0.77	-0.0
1,477,050	+		Psyr_1302	0.82	-1.6
1,477,050	+		Psyr_1302	0.82	-1.1
1,477,051	-		Psyr_1302	0.82	-0.7
1,477,051	-		Psyr_1302	0.82	-0.6
1,477,056	-		Psyr_1302	0.82	-0.6
1,477,056	-		Psyr_1302	0.82	+0.2
1,477,134	+		Psyr_1302	0.83	+0.1
1,477,191	-		Psyr_1302	0.84	+0.4
1,477,192	+		Psyr_1302	0.84	-1.0
1,477,192	+		Psyr_1302	0.84	+0.4
1,477,192	+		Psyr_1302	0.84	-0.6
1,477,192	+		Psyr_1302	0.84	-0.7
1,477,192	+		Psyr_1302	0.84	-0.3
1,477,192	+		Psyr_1302	0.84	-3.2
1,477,192	+		Psyr_1302	0.84	+0.1
1,477,192	+		Psyr_1302	0.84	-1.2
1,477,192	+		Psyr_1302	0.84	-2.1
1,477,192	+		Psyr_1302	0.84	+1.0
1,477,192	+		Psyr_1302	0.84	-1.0
1,477,192	+		Psyr_1302	0.84	+0.2
1,477,192	+		Psyr_1302	0.84	+0.9
1,477,192	+		Psyr_1302	0.84	+0.8
1,477,192	+		Psyr_1302	0.84	+0.4
1,477,192	+		Psyr_1302	0.84	-0.6
1,477,192	+		Psyr_1302	0.84	-2.1
1,477,192	+		Psyr_1302	0.84	+0.4
1,477,192	+		Psyr_1302	0.84	+1.3
1,477,193	-		Psyr_1302	0.84	+2.5
1,477,193	-		Psyr_1302	0.84	+0.9
1,477,193	-		Psyr_1302	0.84	+0.8
1,477,193	-		Psyr_1302	0.84	+0.4
1,477,193	-		Psyr_1302	0.84	-0.5
1,477,193	-		Psyr_1302	0.84	-0.4
1,477,193	-		Psyr_1302	0.84	+0.1
1,477,193	-		Psyr_1302	0.84	+0.3
1,477,193	-		Psyr_1302	0.84	-0.5
1,477,193	-		Psyr_1302	0.84	-1.0
1,477,193	-		Psyr_1302	0.84	-0.1
1,477,193	-		Psyr_1302	0.84	-0.3
1,477,193	-		Psyr_1302	0.84	-0.1
1,477,193	-		Psyr_1302	0.84	+0.4
1,477,193	-		Psyr_1302	0.84	-0.8
1,477,193	-		Psyr_1302	0.84	+0.6
1,477,193	-		Psyr_1302	0.84	-1.7
1,477,193	-		Psyr_1302	0.84	+1.4
1,477,193	-		Psyr_1302	0.84	+1.1
1,477,193	-		Psyr_1302	0.84	+0.1
1,477,193	-		Psyr_1302	0.84	-0.1
1,477,193	-		Psyr_1302	0.84	+0.2
1,477,281	+		Psyr_1302	0.85	+1.1
1,477,281	+		Psyr_1302	0.85	-0.1
1,477,282	-		Psyr_1302	0.85	-2.7
1,477,282	-		Psyr_1302	0.85	+0.3
1,477,282	-		Psyr_1302	0.85	+2.6
1,477,282	-		Psyr_1302	0.85	-0.4
1,477,344	+		Psyr_1302	0.86	+1.1
1,477,344	+		Psyr_1302	0.86	+2.3
1,477,344	+		Psyr_1302	0.86	+0.2
1,477,344	+		Psyr_1302	0.86	-0.9
1,477,345	-		Psyr_1302	0.86	+0.0
1,477,345	-		Psyr_1302	0.86	-0.8
1,477,345	-		Psyr_1302	0.86	+0.6
1,477,345	-		Psyr_1302	0.86	+0.3
1,477,345	-		Psyr_1302	0.86	-1.4
1,477,937	-				-1.5
1,478,097	+				-1.3
1,478,097	+				+1.1
1,478,098	-				-0.3
1,478,142	+				-1.1
1,478,142	+				+1.7
1,478,142	+				+0.7
1,478,143	-				+0.3
1,478,143	-				+1.1
1,478,143	-				-1.5
1,478,143	-				-0.3
1,478,143	-				+0.1
1,478,143	-				-1.1
1,478,143	-				+1.1
1,478,155	+				-2.3
1,478,155	+				+0.1
1,478,155	+				-0.9
1,478,155	+				+0.4
1,478,155	+				-1.2
1,478,155	+				-1.2
1,478,156	-				+0.6
1,478,156	-				-0.1
1,478,156	-				-1.1
1,478,156	-				-0.7
1,478,156	-				-0.3
1,478,218	+				+1.9
1,478,218	+				-0.4
1,478,219	-				-0.3
1,478,219	-				+0.3
1,478,222	+				+1.7
1,478,222	+				-1.9
1,478,222	+				+0.5
1,478,222	+				-1.5
1,478,222	+				+1.3
1,478,222	+				-2.1
1,478,222	+				-2.3
1,478,222	+				+0.8
1,478,222	+				+1.3
1,478,222	+				-1.1
1,478,222	+				+0.7
1,478,222	+				+1.0
1,478,222	+				+1.5
1,478,222	+				-1.6
1,478,222	+				-0.1
1,478,222	+				-0.3
1,478,223	-				+0.2
1,478,223	-				+1.1
1,478,223	-				+0.5
1,478,223	-				+0.9
1,478,223	-				+0.2
1,478,223	-				-0.9
1,478,223	-				+1.2
1,478,223	-				+0.8
1,478,223	-				-0.8
1,478,226	+				-2.9
1,478,226	+				-1.4
1,478,226	+				-0.5
1,478,226	+				-0.1
1,478,226	+				-0.7
1,478,226	+				+1.5
1,478,226	+				-2.9
1,478,226	+				+1.0
1,478,226	+				+0.0
1,478,226	+				-3.4
1,478,227	-				+0.0
1,478,227	-				+1.1
1,478,227	-				-1.9
1,478,227	-				+1.0
1,478,227	-				+0.0
1,478,227	-				-0.8
1,478,227	-				-1.5
1,478,227	-				-0.9
1,478,227	-				-1.0
1,478,227	-				-2.2
1,478,227	-				-0.1
1,478,263	+				-1.5
1,478,339	+				+3.7
1,478,339	+				+2.4
1,478,340	-				-1.0
1,478,340	-				+2.9
1,478,343	-				+0.1
1,478,350	+				+0.1
1,478,350	+				-0.3
1,478,350	+				-0.2
1,478,350	+				-0.1
1,478,350	+				+0.6
1,478,351	-				-1.5
1,478,370	-				-2.3
1,478,371	+				-1.2
1,478,372	-				-0.2
1,478,372	-				-1.4
1,478,372	-				+0.5
1,478,515	+				+1.3
1,478,516	-				+0.2
1,478,530	+				-1.7
1,478,530	+				-1.7
1,478,530	+				+0.5
1,478,530	+				+2.9
1,478,530	+				+1.2
1,478,530	+				+1.8
1,478,531	-				-0.1
1,478,531	-				-0.8
1,478,531	-				-0.3
1,478,531	-				-0.6
1,478,531	-				-0.6
1,478,531	-				-0.0
1,478,531	-				+0.2
1,478,535	+				-1.4
1,478,536	-				-0.5
1,478,601	+				+0.6
1,478,601	+				-0.9
1,478,602	-				+1.8
1,478,604	+				+1.0
1,478,604	+				+2.1
1,478,605	-				-0.4
1,478,605	-				+0.4
1,478,605	-				-1.7
1,478,640	+		Psyr_1303	0.12	-1.2
1,478,640	+		Psyr_1303	0.12	+1.9
1,478,640	+		Psyr_1303	0.12	-1.5
1,478,640	+		Psyr_1303	0.12	-2.6
1,478,641	-		Psyr_1303	0.12	+0.1
1,478,641	-		Psyr_1303	0.12	-0.9
1,478,641	-		Psyr_1303	0.12	-0.3
1,478,751	+		Psyr_1303	0.18	+0.9
1,478,821	-		Psyr_1303	0.23	+0.7
1,478,821	-		Psyr_1303	0.23	+0.6
1,478,853	+		Psyr_1303	0.25	-1.1
1,478,869	-		Psyr_1303	0.26	-1.8
1,478,892	+		Psyr_1303	0.27	-0.3
1,478,892	+		Psyr_1303	0.27	-2.0
1,478,892	+		Psyr_1303	0.27	-1.2
1,478,892	+		Psyr_1303	0.27	-0.3
1,478,893	-		Psyr_1303	0.27	-1.3