Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1051

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,185,673	+		Psyr_1049	0.63	-0.3
1,185,673	+		Psyr_1049	0.63	+0.3
1,185,674	-		Psyr_1049	0.63	+0.7
1,185,833	-		Psyr_1049	0.82	+1.4
1,185,961	-				+0.9
1,186,015	+				-1.3
1,186,015	+				+1.5
1,186,015	+				-0.8
1,186,015	+				-0.5
1,186,015	+				+1.9
1,186,015	+				-0.1
1,186,015	+				-1.2
1,186,015	+				+0.6
1,186,016	-				+1.4
1,186,016	-				+1.9
1,186,016	-				+0.3
1,186,016	-				-0.1
1,186,016	-				-1.1
1,186,016	-				-0.3
1,186,016	-				+0.5
1,186,016	-				+0.0
1,186,016	-				-0.4
1,186,142	+		Psyr_1050	0.32	-2.6
1,186,142	+		Psyr_1050	0.32	-1.0
1,186,142	+		Psyr_1050	0.32	-1.3
1,186,143	-		Psyr_1050	0.32	+1.0
1,186,181	+		Psyr_1050	0.40	+1.6
1,186,182	-		Psyr_1050	0.40	+0.2
1,186,227	+		Psyr_1050	0.50	-1.4
1,186,280	+		Psyr_1050	0.62	+4.3
1,186,281	-		Psyr_1050	0.62	-0.5
1,186,281	-		Psyr_1050	0.62	+3.6
1,186,439	-				+0.8
1,186,493	+				-3.1
1,186,493	+				+1.4
1,186,494	-				+0.3
1,186,494	-				-0.0
1,186,494	-				+0.2
1,186,496	+				+0.1
1,186,497	-				-0.4
1,186,579	+				-0.1
1,186,579	+				-0.7
1,186,579	+				+1.1
1,186,579	+				+0.9
1,186,579	+				+1.1
1,186,579	+				+1.1
1,186,579	+				+0.3
1,186,579	+				+0.1
1,186,579	+				-0.3
1,186,580	-				+0.2
1,186,580	-				+0.6
1,186,580	-				-0.7
1,186,580	-				+0.8
1,186,580	-				+0.3
1,186,580	-				+0.1
1,186,608	+				-0.6
1,186,609	-				+1.0
1,186,609	-				+0.5
1,186,609	-				+0.5
1,186,609	-				+0.5
1,186,612	+				-0.1
1,186,613	-				+1.0
1,186,613	-				+0.6
1,186,654	+				+0.1
1,186,654	+				-0.4
1,186,655	-				+0.5
1,186,655	-				+0.3
1,186,655	-				-0.1
1,186,655	-				+0.3
1,186,655	-				+2.8
1,186,713	+				-1.6
1,186,714	-				-1.2
1,186,714	-				-1.6
1,186,714	-				+0.5
1,186,714	-				-0.2
1,186,974	+		Psyr_1051	0.11	+1.5
1,187,011	+		Psyr_1051	0.12	+0.3
1,187,011	+		Psyr_1051	0.12	-1.6
1,187,011	+		Psyr_1051	0.12	+0.5
1,187,012	-		Psyr_1051	0.12	+0.4
1,187,012	-		Psyr_1051	0.12	-1.4
1,187,012	-		Psyr_1051	0.12	-0.2
1,187,082	-		Psyr_1051	0.15	+1.2
1,187,105	+		Psyr_1051	0.16	+0.6
1,187,105	+		Psyr_1051	0.16	+0.4
1,187,106	-		Psyr_1051	0.16	-0.7
1,187,106	-		Psyr_1051	0.16	-0.7
1,187,106	-		Psyr_1051	0.16	+1.5
1,187,106	-		Psyr_1051	0.16	-1.0
1,187,106	-		Psyr_1051	0.16	+2.5
1,187,106	-		Psyr_1051	0.16	+0.4
1,187,107	+		Psyr_1051	0.16	+0.6
1,187,107	+		Psyr_1051	0.16	-1.3
1,187,108	-		Psyr_1051	0.16	-0.1
1,187,108	-		Psyr_1051	0.16	+0.1
1,187,188	+		Psyr_1051	0.19	+0.6
1,187,188	+		Psyr_1051	0.19	+0.4
1,187,303	+		Psyr_1051	0.23	+0.4
1,187,304	-		Psyr_1051	0.23	-1.2
1,187,304	-		Psyr_1051	0.23	-1.9
1,187,304	-		Psyr_1051	0.23	+0.4
1,187,304	-		Psyr_1051	0.23	+1.6
1,187,304	-		Psyr_1051	0.23	-1.3
1,187,366	+		Psyr_1051	0.25	-1.1
1,187,367	-		Psyr_1051	0.25	-0.0
1,187,367	-		Psyr_1051	0.25	-0.9
1,187,367	-		Psyr_1051	0.25	+1.2
1,187,510	+		Psyr_1051	0.30	+1.3
1,187,510	+		Psyr_1051	0.30	-0.6
1,187,510	+		Psyr_1051	0.30	-0.1
1,187,511	-		Psyr_1051	0.30	+0.7
1,187,511	-		Psyr_1051	0.30	+0.4
1,187,511	-		Psyr_1051	0.30	-1.6
1,187,585	+		Psyr_1051	0.33	+0.6
1,187,585	+		Psyr_1051	0.33	-0.6
1,187,586	-		Psyr_1051	0.33	-0.4
1,187,618	-		Psyr_1051	0.34	+0.1
1,187,645	+		Psyr_1051	0.35	-1.3
1,187,645	+		Psyr_1051	0.35	+1.0
1,187,646	-		Psyr_1051	0.35	-1.1
1,187,646	-		Psyr_1051	0.35	-2.5
1,187,646	-		Psyr_1051	0.35	-0.7
1,187,648	-		Psyr_1051	0.35	+0.4
1,187,648	-		Psyr_1051	0.35	-0.4
1,187,699	+		Psyr_1051	0.37	-0.4
1,187,801	+		Psyr_1051	0.41	+0.2
1,187,801	+		Psyr_1051	0.41	+0.5
1,187,801	+		Psyr_1051	0.41	+1.0
1,187,801	+		Psyr_1051	0.41	-0.9
1,187,802	-		Psyr_1051	0.41	-0.3
1,187,802	-		Psyr_1051	0.41	-0.5
1,187,802	-		Psyr_1051	0.41	-0.1
1,187,854	+		Psyr_1051	0.43	+2.2
1,187,855	-		Psyr_1051	0.43	-0.2
1,187,898	-		Psyr_1051	0.44	-2.1
1,187,898	-		Psyr_1051	0.44	+0.2
1,187,932	+		Psyr_1051	0.45	+0.2
1,187,932	+		Psyr_1051	0.45	-1.7
1,187,932	+		Psyr_1051	0.45	+2.0
1,187,932	+		Psyr_1051	0.45	+0.5
1,187,932	+		Psyr_1051	0.45	+1.2
1,187,932	+		Psyr_1051	0.45	+1.3
1,187,933	-		Psyr_1051	0.45	-0.0
1,187,934	+		Psyr_1051	0.45	+1.2
1,188,086	+		Psyr_1051	0.51	-1.2
1,188,086	+		Psyr_1051	0.51	-0.1
1,188,086	+		Psyr_1051	0.51	+0.9
1,188,086	+		Psyr_1051	0.51	+0.7
1,188,086	+		Psyr_1051	0.51	-1.0
1,188,086	+		Psyr_1051	0.51	+1.0
1,188,086	+		Psyr_1051	0.51	+0.8
1,188,086	+		Psyr_1051	0.51	-0.6
1,188,087	-		Psyr_1051	0.51	+0.6
1,188,087	-		Psyr_1051	0.51	-1.3
1,188,087	-		Psyr_1051	0.51	+0.6
1,188,087	-		Psyr_1051	0.51	+0.1
1,188,087	-		Psyr_1051	0.51	+0.0
1,188,087	-		Psyr_1051	0.51	-2.4
1,188,087	-		Psyr_1051	0.51	-0.3
1,188,087	-		Psyr_1051	0.51	+0.7
1,188,088	+		Psyr_1051	0.51	-1.5
1,188,088	+		Psyr_1051	0.51	-1.6
1,188,088	+		Psyr_1051	0.51	-0.1
1,188,088	+		Psyr_1051	0.51	-3.4
1,188,088	+		Psyr_1051	0.51	-0.1
1,188,088	+		Psyr_1051	0.51	-0.8
1,188,088	+		Psyr_1051	0.51	+2.0
1,188,088	+		Psyr_1051	0.51	-1.7
1,188,088	+		Psyr_1051	0.51	+1.2
1,188,088	+		Psyr_1051	0.51	+0.6
1,188,088	+		Psyr_1051	0.51	-0.1
1,188,088	+		Psyr_1051	0.51	+0.1
1,188,088	+		Psyr_1051	0.51	-1.7
1,188,088	+		Psyr_1051	0.51	+0.6
1,188,088	+		Psyr_1051	0.51	-1.4
1,188,088	+		Psyr_1051	0.51	-0.9
1,188,088	+		Psyr_1051	0.51	-0.8
1,188,088	+		Psyr_1051	0.51	+0.2
1,188,089	-		Psyr_1051	0.51	-0.3
1,188,089	-		Psyr_1051	0.51	-1.2
1,188,089	-		Psyr_1051	0.51	-0.4
1,188,089	-		Psyr_1051	0.51	-1.6
1,188,089	-		Psyr_1051	0.51	-1.2
1,188,089	-		Psyr_1051	0.51	+0.4
1,188,089	-		Psyr_1051	0.51	-0.8
1,188,089	-		Psyr_1051	0.51	-0.3
1,188,089	-		Psyr_1051	0.51	+1.4
1,188,089	-		Psyr_1051	0.51	+0.4
1,188,089	-		Psyr_1051	0.51	+0.5
1,188,089	-		Psyr_1051	0.51	-0.1
1,188,089	-		Psyr_1051	0.51	+0.9
1,188,089	-		Psyr_1051	0.51	-0.1
1,188,089	-		Psyr_1051	0.51	-1.6
1,188,089	-		Psyr_1051	0.51	+1.2
1,188,089	-		Psyr_1051	0.51	+1.3
1,188,089	-		Psyr_1051	0.51	-0.4
1,188,089	-		Psyr_1051	0.51	+0.2
1,188,089	-		Psyr_1051	0.51	-0.4
1,188,090	+		Psyr_1051	0.51	+2.4
1,188,090	+		Psyr_1051	0.51	-0.5
1,188,090	+		Psyr_1051	0.51	+0.4
1,188,090	+		Psyr_1051	0.51	-1.1
1,188,090	+		Psyr_1051	0.51	+0.2
1,188,090	+		Psyr_1051	0.51	-3.2
1,188,090	+		Psyr_1051	0.51	+0.6
1,188,090	+		Psyr_1051	0.51	-0.6
1,188,090	+		Psyr_1051	0.51	-1.2
1,188,090	+		Psyr_1051	0.51	+1.4
1,188,090	+		Psyr_1051	0.51	-0.7
1,188,090	+		Psyr_1051	0.51	+0.0
1,188,090	+		Psyr_1051	0.51	-0.4
1,188,090	+		Psyr_1051	0.51	+0.0
1,188,090	+		Psyr_1051	0.51	-2.2
1,188,090	+		Psyr_1051	0.51	+0.5
1,188,090	+		Psyr_1051	0.51	+0.4
1,188,090	+		Psyr_1051	0.51	-0.3
1,188,090	+		Psyr_1051	0.51	+1.6
1,188,090	+		Psyr_1051	0.51	+0.6
1,188,090	+		Psyr_1051	0.51	-1.5
1,188,090	+		Psyr_1051	0.51	+1.6
1,188,090	+		Psyr_1051	0.51	-0.0
1,188,090	+		Psyr_1051	0.51	-2.3
1,188,091	-		Psyr_1051	0.51	-0.7
1,188,091	-		Psyr_1051	0.51	-0.3
1,188,091	-		Psyr_1051	0.51	+0.9
1,188,091	-		Psyr_1051	0.51	-1.7
1,188,091	-		Psyr_1051	0.51	-0.6
1,188,091	-		Psyr_1051	0.51	+0.0
1,188,091	-		Psyr_1051	0.51	+0.1
1,188,091	-		Psyr_1051	0.51	-1.2
1,188,091	-		Psyr_1051	0.51	+1.3
1,188,091	-		Psyr_1051	0.51	-0.2
1,188,091	-		Psyr_1051	0.51	+2.1
1,188,091	-		Psyr_1051	0.51	-1.3
1,188,091	-		Psyr_1051	0.51	+0.0
1,188,091	-		Psyr_1051	0.51	-0.6
1,188,091	-		Psyr_1051	0.51	-0.5
1,188,091	-		Psyr_1051	0.51	+0.0
1,188,091	-		Psyr_1051	0.51	+0.5
1,188,091	-		Psyr_1051	0.51	+0.2
1,188,091	-		Psyr_1051	0.51	+0.6
1,188,091	-		Psyr_1051	0.51	+3.7
1,188,091	-		Psyr_1051	0.51	+0.0
1,188,091	-		Psyr_1051	0.51	+0.4
1,188,092	+		Psyr_1051	0.51	-0.7
1,188,092	+		Psyr_1051	0.51	+0.1
1,188,092	+		Psyr_1051	0.51	+0.4
1,188,092	+		Psyr_1051	0.51	+0.0
1,188,092	+		Psyr_1051	0.51	+1.7
1,188,092	+		Psyr_1051	0.51	+0.7
1,188,092	+		Psyr_1051	0.51	+0.5
1,188,093	-		Psyr_1051	0.51	-1.7
1,188,093	-		Psyr_1051	0.51	-1.3
1,188,093	-		Psyr_1051	0.51	-0.4
1,188,093	-		Psyr_1051	0.51	+3.0
1,188,093	-		Psyr_1051	0.51	-0.5
1,188,093	-		Psyr_1051	0.51	-0.1
1,188,093	-		Psyr_1051	0.51	-0.2
1,188,093	-		Psyr_1051	0.51	+0.2
1,188,093	-		Psyr_1051	0.51	-0.3
1,188,093	-		Psyr_1051	0.51	+0.2
1,188,093	-		Psyr_1051	0.51	-0.1
1,188,093	-		Psyr_1051	0.51	-2.0
1,188,389	+		Psyr_1051	0.62	+0.3
1,188,390	-		Psyr_1051	0.62	-0.1
1,188,446	+		Psyr_1051	0.64	-0.7
1,188,446	+		Psyr_1051	0.64	+0.6
1,188,447	-		Psyr_1051	0.64	-0.5
1,188,447	-		Psyr_1051	0.64	-1.1
1,188,447	-		Psyr_1051	0.64	+0.3
1,188,497	+		Psyr_1051	0.66	-2.9
1,188,497	+		Psyr_1051	0.66	-0.0
1,188,513	-		Psyr_1051	0.66	-0.2
1,188,516	-		Psyr_1051	0.66	+0.3
1,188,574	+		Psyr_1051	0.68	+0.3
1,188,580	-		Psyr_1051	0.69	+2.2
1,188,580	-		Psyr_1051	0.69	+0.6
1,188,581	+		Psyr_1051	0.69	+1.3
1,188,586	+		Psyr_1051	0.69	+1.1
1,188,586	+		Psyr_1051	0.69	-0.6
1,188,586	+		Psyr_1051	0.69	+1.1
1,188,586	+		Psyr_1051	0.69	-0.5
1,188,587	-		Psyr_1051	0.69	+1.4
1,188,587	-		Psyr_1051	0.69	+0.5
1,188,652	+		Psyr_1051	0.71	-0.1
1,188,652	+		Psyr_1051	0.71	+0.3
1,188,652	+		Psyr_1051	0.71	+0.2
1,188,652	+		Psyr_1051	0.71	-0.4
1,188,653	-		Psyr_1051	0.71	+1.2
1,188,659	+		Psyr_1051	0.71	+0.7
1,188,659	+		Psyr_1051	0.71	+1.5
1,188,659	+		Psyr_1051	0.71	+0.6
1,188,659	+		Psyr_1051	0.71	+0.2
1,188,659	+		Psyr_1051	0.71	-0.7
1,188,659	+		Psyr_1051	0.71	+0.0
1,188,660	-		Psyr_1051	0.71	-0.8
1,188,660	-		Psyr_1051	0.71	-0.6
1,188,660	-		Psyr_1051	0.71	+2.1
1,188,660	-		Psyr_1051	0.71	-0.2
1,188,660	-		Psyr_1051	0.71	+0.1
1,188,660	-		Psyr_1051	0.71	-1.1
1,188,792	+		Psyr_1051	0.76	-1.8
1,188,792	+		Psyr_1051	0.76	-0.8
1,188,792	+		Psyr_1051	0.76	+0.5
1,188,792	+		Psyr_1051	0.76	+0.5
1,188,793	-		Psyr_1051	0.76	-0.4
1,188,827	-		Psyr_1051	0.77	-2.3
1,188,827	-		Psyr_1051	0.77	+0.0
1,188,827	-		Psyr_1051	0.77	-1.9
1,188,890	+		Psyr_1051	0.80	+0.1
1,188,891	-		Psyr_1051	0.80	-1.1
1,188,891	-		Psyr_1051	0.80	-1.1
1,188,891	-		Psyr_1051	0.80	+1.1
1,188,891	-		Psyr_1051	0.80	+0.2
1,188,892	+		Psyr_1051	0.80	-0.4
1,188,968	+		Psyr_1051	0.83	-0.6
1,188,969	-		Psyr_1051	0.83	-1.7
1,188,977	-		Psyr_1051	0.83	+0.7
1,188,980	+		Psyr_1051	0.83	+0.9
1,188,980	+		Psyr_1051	0.83	+0.1
1,189,021	+		Psyr_1051	0.84	+0.0
1,189,108	+		Psyr_1051	0.88	-2.0
1,189,109	-		Psyr_1051	0.88	-1.8
1,189,287	+				-0.7
1,189,288	-				+0.1
1,189,288	-				-0.6
1,189,288	-				+1.9
1,189,294	+				-0.3
1,189,345	+				-0.9
1,189,345	+				-0.4
1,189,346	-				+1.1
1,189,349	-				+0.1
1,189,354	+				+0.3
1,189,355	-				+2.2
1,189,423	-				-0.3
1,189,451	+				+0.6
1,189,452	-				-1.2
1,189,452	-				-0.6
1,189,468	+				+0.7
1,189,469	-				-2.3
1,189,483	+				-0.8
1,189,484	-				-0.7
1,189,499	+				-0.6
1,189,500	-				-0.0
1,189,530	-				-1.9
1,189,563	+				+0.9
1,189,600	+				+1.6
1,189,600	+				-0.8
1,189,601	-				+1.3
1,189,601	-				+2.0
1,189,601	-				-0.9
1,189,667	+				-2.2
1,189,667	+				+0.3
1,189,667	+				-0.9
1,189,667	+				+0.5
1,189,667	+				+1.1
1,189,667	+				-0.9
1,189,668	-				+1.3
1,189,668	-				-0.7
1,189,668	-				+2.0
1,189,668	-				+0.6
1,189,706	+				+0.5
1,189,706	+				+0.5
1,189,787	+		Psyr_1052	0.12	+0.7
1,189,787	+		Psyr_1052	0.12	-0.3
1,189,787	+		Psyr_1052	0.12	+0.8
1,189,787	+		Psyr_1052	0.12	+0.8
1,189,787	+		Psyr_1052	0.12	-0.9
1,189,788	-		Psyr_1052	0.12	-1.0
1,189,788	-		Psyr_1052	0.12	+1.8
1,189,788	-		Psyr_1052	0.12	-0.1
1,189,788	-		Psyr_1052	0.12	-0.2
1,189,788	-		Psyr_1052	0.12	-0.2
1,189,788	-		Psyr_1052	0.12	-0.0
1,189,788	-		Psyr_1052	0.12	-0.1
1,189,788	-		Psyr_1052	0.12	+0.9
1,189,788	-		Psyr_1052	0.12	+0.6
1,189,788	-		Psyr_1052	0.12	-1.2
1,189,788	-		Psyr_1052	0.12	-0.7
1,189,923	+		Psyr_1052	0.21	-1.0
1,189,923	+		Psyr_1052	0.21	+0.1
1,189,923	+		Psyr_1052	0.21	+0.5
1,189,924	-		Psyr_1052	0.21	+1.4
1,189,965	-		Psyr_1052	0.24	+0.0
1,189,983	-		Psyr_1052	0.26	-1.9
1,190,279	-		Psyr_1052	0.46	-0.3
1,190,279	-		Psyr_1052	0.46	+0.4
1,190,417	+		Psyr_1052	0.55	+0.3
1,190,417	+		Psyr_1052	0.55	-1.7
1,190,417	+		Psyr_1052	0.55	-0.6
1,190,417	+		Psyr_1052	0.55	+1.1
1,190,417	+		Psyr_1052	0.55	+0.2
1,190,418	-		Psyr_1052	0.56	-0.3
1,190,418	-		Psyr_1052	0.56	+0.5
1,190,418	-		Psyr_1052	0.56	+1.4
1,190,418	-		Psyr_1052	0.56	-0.2
1,190,418	-		Psyr_1052	0.56	-1.1
1,190,418	-		Psyr_1052	0.56	+1.4
1,190,418	-		Psyr_1052	0.56	-0.2
1,190,418	-		Psyr_1052	0.56	-0.6
1,190,418	-		Psyr_1052	0.56	+3.7