Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0815

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0814 and Psyr_0815 are separated by 248 nucleotidesPsyr_0815 and Psyr_0816 are separated by 354 nucleotides Psyr_0814: Psyr_0814 - Protein of unknown function DUF124, at 918,412 to 919,287 _0814 Psyr_0815: Psyr_0815 - nicotinate-nucleotide pyrophosphorylase (carboxylating), at 919,536 to 920,384 _0815 Psyr_0816: Psyr_0816 - conserved hypothetical protein, at 920,739 to 922,994 _0816 Position (kb) 919 920 921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 918.587 kb on + strand, within Psyr_0814at 918.588 kb on - strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.052 kb on + strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.053 kb on - strand, within Psyr_0814at 919.130 kb on + strand, within Psyr_0814at 919.131 kb on - strand, within Psyr_0814at 919.173 kb on - strand, within Psyr_0814at 919.200 kb on + strandat 919.356 kb on - strandat 919.356 kb on - strandat 919.356 kb on - strandat 919.471 kb on + strandat 919.472 kb on - strandat 919.495 kb on + strandat 919.509 kb on + strandat 919.509 kb on + strandat 919.510 kb on - strandat 919.604 kb on - strandat 919.604 kb on - strandat 919.604 kb on - strandat 919.604 kb on - strandat 919.894 kb on + strand, within Psyr_0815at 919.939 kb on + strand, within Psyr_0815at 919.939 kb on + strand, within Psyr_0815at 919.939 kb on + strand, within Psyr_0815at 919.940 kb on - strand, within Psyr_0815at 919.940 kb on - strand, within Psyr_0815at 919.940 kb on - strand, within Psyr_0815at 919.940 kb on - strand, within Psyr_0815at 920.023 kb on + strand, within Psyr_0815at 920.023 kb on + strand, within Psyr_0815at 920.023 kb on + strand, within Psyr_0815at 920.023 kb on + strand, within Psyr_0815at 920.023 kb on + strand, within Psyr_0815at 920.024 kb on - strand, within Psyr_0815at 920.024 kb on - strand, within Psyr_0815at 920.238 kb on - strand, within Psyr_0815at 920.374 kb on - strandat 920.414 kb on + strandat 920.414 kb on + strandat 920.415 kb on - strandat 920.415 kb on - strandat 920.415 kb on - strandat 920.416 kb on + strandat 920.417 kb on - strandat 920.417 kb on - strandat 920.417 kb on - strandat 920.462 kb on + strandat 920.463 kb on - strandat 920.614 kb on + strandat 920.626 kb on + strandat 920.626 kb on + strandat 920.626 kb on + strandat 920.626 kb on + strandat 920.627 kb on - strandat 920.627 kb on - strandat 920.688 kb on - strandat 920.688 kb on - strandat 920.737 kb on + strandat 920.737 kb on + strandat 920.737 kb on + strandat 920.737 kb on + strandat 920.738 kb on - strandat 920.738 kb on - strandat 920.738 kb on - strandat 920.759 kb on - strandat 920.785 kb on + strandat 920.816 kb on - strandat 920.995 kb on + strand, within Psyr_0816at 920.995 kb on + strand, within Psyr_0816at 920.995 kb on + strand, within Psyr_0816at 920.995 kb on + strand, within Psyr_0816at 920.996 kb on - strand, within Psyr_0816at 920.996 kb on - strand, within Psyr_0816at 920.996 kb on - strand, within Psyr_0816at 920.996 kb on - strand, within Psyr_0816at 921.021 kb on + strand, within Psyr_0816at 921.022 kb on - strand, within Psyr_0816at 921.022 kb on - strand, within Psyr_0816at 921.022 kb on - strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.348 kb on + strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.349 kb on - strand, within Psyr_0816at 921.376 kb on - strand, within Psyr_0816at 921.376 kb on - strand, within Psyr_0816at 921.376 kb on - strand, within Psyr_0816

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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918,587 + Psyr_0814 0.20 -0.4
918,588 - Psyr_0814 0.20 -1.1
919,052 + Psyr_0814 0.73 +0.0
919,052 + Psyr_0814 0.73 +2.0
919,052 + Psyr_0814 0.73 -0.2
919,052 + Psyr_0814 0.73 +2.0
919,052 + Psyr_0814 0.73 -0.0
919,052 + Psyr_0814 0.73 +1.8
919,052 + Psyr_0814 0.73 +0.7
919,052 + Psyr_0814 0.73 +1.4
919,052 + Psyr_0814 0.73 -0.6
919,052 + Psyr_0814 0.73 -0.2
919,053 - Psyr_0814 0.73 +1.2
919,053 - Psyr_0814 0.73 -0.8
919,053 - Psyr_0814 0.73 +0.1
919,053 - Psyr_0814 0.73 +0.9
919,053 - Psyr_0814 0.73 +0.0
919,053 - Psyr_0814 0.73 +0.2
919,053 - Psyr_0814 0.73 +0.7
919,053 - Psyr_0814 0.73 +0.8
919,130 + Psyr_0814 0.82 +0.0
919,131 - Psyr_0814 0.82 +0.7
919,173 - Psyr_0814 0.87 -0.8
919,200 + -0.3
919,356 - +0.5
919,356 - -0.1
919,356 - -0.7
919,471 + +1.7
919,472 - -1.8
919,495 + -1.0
919,509 + -0.9
919,509 + +0.5
919,510 - +0.2
919,604 - +0.0
919,604 - +0.7
919,604 - -1.1
919,604 - +0.1
919,894 + Psyr_0815 0.42 -0.9
919,939 + Psyr_0815 0.47 -1.3
919,939 + Psyr_0815 0.47 -0.1
919,939 + Psyr_0815 0.47 -0.1
919,940 - Psyr_0815 0.48 +0.3
919,940 - Psyr_0815 0.48 -0.4
919,940 - Psyr_0815 0.48 +1.8
919,940 - Psyr_0815 0.48 -0.4
920,023 + Psyr_0815 0.57 -1.0
920,023 + Psyr_0815 0.57 -1.1
920,023 + Psyr_0815 0.57 -0.2
920,023 + Psyr_0815 0.57 +0.0
920,023 + Psyr_0815 0.57 -3.0
920,024 - Psyr_0815 0.57 +0.3
920,024 - Psyr_0815 0.57 -1.4
920,238 - Psyr_0815 0.83 +1.1
920,374 - -0.7
920,414 + -0.4
920,414 + +1.7
920,415 - -0.2
920,415 - +1.5
920,415 - +2.0
920,416 + +0.2
920,417 - -1.9
920,417 - +3.4
920,417 - +1.4
920,462 + -0.5
920,463 - +0.9
920,614 + +0.6
920,626 + -0.0
920,626 + -1.0
920,626 + -2.0
920,626 + +0.2
920,627 - +0.5
920,627 - +0.4
920,688 - +1.6
920,688 - +1.5
920,737 + +0.9
920,737 + -0.8
920,737 + +0.1
920,737 + -0.9
920,738 - +0.6
920,738 - +0.1
920,738 - -1.5
920,759 - +0.8
920,785 + -0.3
920,816 - +1.2
920,995 + Psyr_0816 0.11 +0.7
920,995 + Psyr_0816 0.11 -2.7
920,995 + Psyr_0816 0.11 +0.9
920,995 + Psyr_0816 0.11 +0.0
920,996 - Psyr_0816 0.11 +2.5
920,996 - Psyr_0816 0.11 +0.0
920,996 - Psyr_0816 0.11 +0.2
920,996 - Psyr_0816 0.11 +1.0
921,021 + Psyr_0816 0.12 +1.8
921,022 - Psyr_0816 0.13 +1.3
921,022 - Psyr_0816 0.13 -0.0
921,022 - Psyr_0816 0.13 +1.5
921,348 + Psyr_0816 0.27 +1.2
921,348 + Psyr_0816 0.27 -0.0
921,348 + Psyr_0816 0.27 -0.2
921,348 + Psyr_0816 0.27 +0.9
921,348 + Psyr_0816 0.27 +0.7
921,348 + Psyr_0816 0.27 +1.5
921,349 - Psyr_0816 0.27 +1.3
921,349 - Psyr_0816 0.27 +0.1
921,349 - Psyr_0816 0.27 +0.4
921,349 - Psyr_0816 0.27 +1.7
921,349 - Psyr_0816 0.27 +1.2
921,349 - Psyr_0816 0.27 +1.1
921,376 - Psyr_0816 0.28 +2.1
921,376 - Psyr_0816 0.28 +0.1
921,376 - Psyr_0816 0.28 +0.2

Or see this region's nucleotide sequence