Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3677

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3676 and Pf6N2E2_3677 are separated by 182 nucleotidesPf6N2E2_3677 and Pf6N2E2_3678 are separated by 84 nucleotidesPf6N2E2_3678 and Pf6N2E2_3679 are separated by 137 nucleotides Pf6N2E2_3676 - Phosphodiesterase/alkaline phosphatase D-like, at 4,282,565 to 4,283,956 _3676 Pf6N2E2_3677 - Sensory box/GGDEF family protein, at 4,284,139 to 4,286,832 _3677 Pf6N2E2_3678 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 4,286,917 to 4,287,564 _3678 Pf6N2E2_3679 - Protein involved in catabolism of external DNA, at 4,287,702 to 4,288,541 _3679 Position (kb) 4284 4285 4286 4287Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4283.185 kb on + strand, within Pf6N2E2_3676at 4283.186 kb on - strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.189 kb on + strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.190 kb on - strand, within Pf6N2E2_3676at 4283.261 kb on + strand, within Pf6N2E2_3676at 4283.291 kb on + strand, within Pf6N2E2_3676at 4283.340 kb on + strand, within Pf6N2E2_3676at 4283.340 kb on + strand, within Pf6N2E2_3676at 4283.341 kb on - strand, within Pf6N2E2_3676at 4283.341 kb on - strand, within Pf6N2E2_3676at 4283.366 kb on + strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.367 kb on - strand, within Pf6N2E2_3676at 4283.613 kb on + strand, within Pf6N2E2_3676at 4283.614 kb on - strand, within Pf6N2E2_3676at 4283.738 kb on + strand, within Pf6N2E2_3676at 4283.738 kb on + strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.739 kb on - strand, within Pf6N2E2_3676at 4283.746 kb on + strand, within Pf6N2E2_3676at 4283.747 kb on - strand, within Pf6N2E2_3676at 4283.747 kb on - strand, within Pf6N2E2_3676at 4283.819 kb on + strandat 4283.867 kb on + strandat 4283.868 kb on - strandat 4284.019 kb on + strandat 4284.020 kb on - strandat 4284.021 kb on + strandat 4284.085 kb on + strandat 4284.086 kb on - strandat 4284.086 kb on - strandat 4284.089 kb on - strandat 4284.194 kb on + strandat 4284.195 kb on - strandat 4284.217 kb on - strandat 4284.286 kb on + strandat 4284.306 kb on - strandat 4284.364 kb on + strandat 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.412 kb on + strand, within Pf6N2E2_3677at 4284.478 kb on + strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.479 kb on - strand, within Pf6N2E2_3677at 4284.481 kb on - strand, within Pf6N2E2_3677at 4284.481 kb on - strand, within Pf6N2E2_3677at 4284.536 kb on + strand, within Pf6N2E2_3677at 4284.537 kb on - strand, within Pf6N2E2_3677at 4284.698 kb on - strand, within Pf6N2E2_3677at 4284.698 kb on - strand, within Pf6N2E2_3677at 4284.760 kb on + strand, within Pf6N2E2_3677at 4284.760 kb on + strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.761 kb on - strand, within Pf6N2E2_3677at 4284.823 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.844 kb on + strand, within Pf6N2E2_3677at 4284.845 kb on - strand, within Pf6N2E2_3677at 4284.886 kb on + strand, within Pf6N2E2_3677at 4284.887 kb on - strand, within Pf6N2E2_3677at 4285.055 kb on + strand, within Pf6N2E2_3677at 4285.056 kb on - strand, within Pf6N2E2_3677at 4285.056 kb on - strand, within Pf6N2E2_3677at 4285.056 kb on - strand, within Pf6N2E2_3677at 4285.240 kb on + strand, within Pf6N2E2_3677at 4285.240 kb on + strand, within Pf6N2E2_3677at 4285.241 kb on - strand, within Pf6N2E2_3677at 4285.273 kb on + strand, within Pf6N2E2_3677at 4285.274 kb on - strand, within Pf6N2E2_3677at 4285.274 kb on - strand, within Pf6N2E2_3677at 4285.454 kb on - strand, within Pf6N2E2_3677at 4285.480 kb on + strand, within Pf6N2E2_3677at 4285.481 kb on - strand, within Pf6N2E2_3677at 4285.481 kb on - strand, within Pf6N2E2_3677at 4285.481 kb on - strand, within Pf6N2E2_3677at 4285.492 kb on + strand, within Pf6N2E2_3677at 4285.493 kb on - strand, within Pf6N2E2_3677at 4285.493 kb on - strand, within Pf6N2E2_3677at 4285.493 kb on - strand, within Pf6N2E2_3677at 4285.493 kb on - strand, within Pf6N2E2_3677at 4285.493 kb on - strand, within Pf6N2E2_3677at 4285.546 kb on + strand, within Pf6N2E2_3677at 4286.047 kb on + strand, within Pf6N2E2_3677at 4286.047 kb on + strand, within Pf6N2E2_3677at 4286.047 kb on + strand, within Pf6N2E2_3677at 4286.047 kb on + strand, within Pf6N2E2_3677at 4286.048 kb on - strand, within Pf6N2E2_3677at 4286.048 kb on - strand, within Pf6N2E2_3677at 4286.110 kb on + strand, within Pf6N2E2_3677at 4286.110 kb on + strand, within Pf6N2E2_3677at 4286.111 kb on - strand, within Pf6N2E2_3677at 4286.111 kb on - strand, within Pf6N2E2_3677at 4286.111 kb on - strand, within Pf6N2E2_3677at 4286.536 kb on + strand, within Pf6N2E2_3677at 4286.552 kb on - strand, within Pf6N2E2_3677at 4286.552 kb on - strand, within Pf6N2E2_3677at 4286.841 kb on + strandat 4286.841 kb on + strandat 4286.841 kb on + strandat 4286.843 kb on + strandat 4286.843 kb on + strandat 4286.843 kb on + strandat 4286.844 kb on - strandat 4286.881 kb on - strandat 4286.881 kb on - strandat 4286.881 kb on - strandat 4287.181 kb on + strand, within Pf6N2E2_3678at 4287.181 kb on + strand, within Pf6N2E2_3678at 4287.182 kb on - strand, within Pf6N2E2_3678at 4287.182 kb on - strand, within Pf6N2E2_3678at 4287.235 kb on + strand, within Pf6N2E2_3678at 4287.235 kb on + strand, within Pf6N2E2_3678at 4287.257 kb on - strand, within Pf6N2E2_3678at 4287.257 kb on - strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.352 kb on + strand, within Pf6N2E2_3678at 4287.353 kb on - strand, within Pf6N2E2_3678at 4287.353 kb on - strand, within Pf6N2E2_3678at 4287.353 kb on - strand, within Pf6N2E2_3678at 4287.353 kb on - strand, within Pf6N2E2_3678at 4287.472 kb on + strand, within Pf6N2E2_3678at 4287.472 kb on + strand, within Pf6N2E2_3678at 4287.473 kb on - strand, within Pf6N2E2_3678at 4287.487 kb on + strand, within Pf6N2E2_3678at 4287.488 kb on - strand, within Pf6N2E2_3678at 4287.499 kb on + strand, within Pf6N2E2_3678at 4287.523 kb on + strandat 4287.523 kb on + strandat 4287.523 kb on + strandat 4287.524 kb on - strandat 4287.635 kb on + strandat 4287.635 kb on + strandat 4287.641 kb on + strandat 4287.641 kb on + strandat 4287.641 kb on + strandat 4287.642 kb on - strandat 4287.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,283,185 + Pf6N2E2_3676 0.45 +0.7
4,283,186 - Pf6N2E2_3676 0.45 +0.5
4,283,189 + Pf6N2E2_3676 0.45 -1.4
4,283,189 + Pf6N2E2_3676 0.45 +0.6
4,283,189 + Pf6N2E2_3676 0.45 -2.9
4,283,189 + Pf6N2E2_3676 0.45 +0.5
4,283,189 + Pf6N2E2_3676 0.45 +0.7
4,283,189 + Pf6N2E2_3676 0.45 +2.7
4,283,189 + Pf6N2E2_3676 0.45 +1.2
4,283,189 + Pf6N2E2_3676 0.45 +0.4
4,283,189 + Pf6N2E2_3676 0.45 +0.5
4,283,190 - Pf6N2E2_3676 0.45 +0.8
4,283,190 - Pf6N2E2_3676 0.45 -1.6
4,283,190 - Pf6N2E2_3676 0.45 +0.0
4,283,190 - Pf6N2E2_3676 0.45 -0.9
4,283,190 - Pf6N2E2_3676 0.45 -1.1
4,283,190 - Pf6N2E2_3676 0.45 +1.1
4,283,190 - Pf6N2E2_3676 0.45 +0.7
4,283,190 - Pf6N2E2_3676 0.45 +0.2
4,283,261 + Pf6N2E2_3676 0.50 -2.4
4,283,291 + Pf6N2E2_3676 0.52 +0.5
4,283,340 + Pf6N2E2_3676 0.56 -0.5
4,283,340 + Pf6N2E2_3676 0.56 +0.7
4,283,341 - Pf6N2E2_3676 0.56 +0.4
4,283,341 - Pf6N2E2_3676 0.56 +0.3
4,283,366 + Pf6N2E2_3676 0.58 +0.5
4,283,367 - Pf6N2E2_3676 0.58 +0.7
4,283,367 - Pf6N2E2_3676 0.58 +0.3
4,283,367 - Pf6N2E2_3676 0.58 -0.3
4,283,367 - Pf6N2E2_3676 0.58 -0.2
4,283,613 + Pf6N2E2_3676 0.75 +0.2
4,283,614 - Pf6N2E2_3676 0.75 -1.4
4,283,738 + Pf6N2E2_3676 0.84 -1.6
4,283,738 + Pf6N2E2_3676 0.84 -0.2
4,283,739 - Pf6N2E2_3676 0.84 -0.3
4,283,739 - Pf6N2E2_3676 0.84 -0.5
4,283,739 - Pf6N2E2_3676 0.84 +0.6
4,283,739 - Pf6N2E2_3676 0.84 +0.1
4,283,746 + Pf6N2E2_3676 0.85 +0.6
4,283,747 - Pf6N2E2_3676 0.85 -1.0
4,283,747 - Pf6N2E2_3676 0.85 +1.7
4,283,819 + +1.6
4,283,867 + +0.4
4,283,868 - -0.1
4,284,019 + +1.1
4,284,020 - +0.4
4,284,021 + -1.1
4,284,085 + +0.8
4,284,086 - +0.0
4,284,086 - +0.1
4,284,089 - -1.4
4,284,194 + -0.7
4,284,195 - -0.1
4,284,217 - -2.4
4,284,286 + -1.9
4,284,306 - -0.4
4,284,364 + -2.4
4,284,412 + Pf6N2E2_3677 0.10 -0.3
4,284,412 + Pf6N2E2_3677 0.10 -2.3
4,284,412 + Pf6N2E2_3677 0.10 -2.2
4,284,478 + Pf6N2E2_3677 0.13 -2.8
4,284,479 - Pf6N2E2_3677 0.13 -2.3
4,284,479 - Pf6N2E2_3677 0.13 -2.1
4,284,479 - Pf6N2E2_3677 0.13 -2.4
4,284,479 - Pf6N2E2_3677 0.13 +1.0
4,284,479 - Pf6N2E2_3677 0.13 -0.9
4,284,479 - Pf6N2E2_3677 0.13 -3.6
4,284,479 - Pf6N2E2_3677 0.13 -2.0
4,284,479 - Pf6N2E2_3677 0.13 -2.0
4,284,479 - Pf6N2E2_3677 0.13 -0.2
4,284,479 - Pf6N2E2_3677 0.13 +0.1
4,284,479 - Pf6N2E2_3677 0.13 -0.9
4,284,481 - Pf6N2E2_3677 0.13 -2.1
4,284,481 - Pf6N2E2_3677 0.13 -1.9
4,284,536 + Pf6N2E2_3677 0.15 -3.0
4,284,537 - Pf6N2E2_3677 0.15 +0.6
4,284,698 - Pf6N2E2_3677 0.21 -0.3
4,284,698 - Pf6N2E2_3677 0.21 +0.7
4,284,760 + Pf6N2E2_3677 0.23 -1.2
4,284,760 + Pf6N2E2_3677 0.23 +0.4
4,284,761 - Pf6N2E2_3677 0.23 -2.9
4,284,761 - Pf6N2E2_3677 0.23 -1.5
4,284,761 - Pf6N2E2_3677 0.23 -1.9
4,284,761 - Pf6N2E2_3677 0.23 -0.7
4,284,761 - Pf6N2E2_3677 0.23 -3.1
4,284,761 - Pf6N2E2_3677 0.23 -2.1
4,284,823 + Pf6N2E2_3677 0.25 -1.4
4,284,844 + Pf6N2E2_3677 0.26 -2.7
4,284,844 + Pf6N2E2_3677 0.26 -1.3
4,284,844 + Pf6N2E2_3677 0.26 -1.5
4,284,845 - Pf6N2E2_3677 0.26 +0.9
4,284,886 + Pf6N2E2_3677 0.28 -0.2
4,284,887 - Pf6N2E2_3677 0.28 -0.7
4,285,055 + Pf6N2E2_3677 0.34 -1.5
4,285,056 - Pf6N2E2_3677 0.34 -2.4
4,285,056 - Pf6N2E2_3677 0.34 -0.6
4,285,056 - Pf6N2E2_3677 0.34 +1.4
4,285,240 + Pf6N2E2_3677 0.41 -3.0
4,285,240 + Pf6N2E2_3677 0.41 -4.2
4,285,241 - Pf6N2E2_3677 0.41 -1.0
4,285,273 + Pf6N2E2_3677 0.42 -1.2
4,285,274 - Pf6N2E2_3677 0.42 -0.9
4,285,274 - Pf6N2E2_3677 0.42 -1.9
4,285,454 - Pf6N2E2_3677 0.49 -1.7
4,285,480 + Pf6N2E2_3677 0.50 +0.1
4,285,481 - Pf6N2E2_3677 0.50 -1.9
4,285,481 - Pf6N2E2_3677 0.50 -0.3
4,285,481 - Pf6N2E2_3677 0.50 -1.5
4,285,492 + Pf6N2E2_3677 0.50 -1.1
4,285,493 - Pf6N2E2_3677 0.50 +0.7
4,285,493 - Pf6N2E2_3677 0.50 -1.8
4,285,493 - Pf6N2E2_3677 0.50 -0.3
4,285,493 - Pf6N2E2_3677 0.50 -1.1
4,285,493 - Pf6N2E2_3677 0.50 +0.4
4,285,546 + Pf6N2E2_3677 0.52 -1.1
4,286,047 + Pf6N2E2_3677 0.71 +0.1
4,286,047 + Pf6N2E2_3677 0.71 -2.2
4,286,047 + Pf6N2E2_3677 0.71 +0.1
4,286,047 + Pf6N2E2_3677 0.71 -3.1
4,286,048 - Pf6N2E2_3677 0.71 +0.1
4,286,048 - Pf6N2E2_3677 0.71 -1.0
4,286,110 + Pf6N2E2_3677 0.73 -0.4
4,286,110 + Pf6N2E2_3677 0.73 -0.9
4,286,111 - Pf6N2E2_3677 0.73 -3.8
4,286,111 - Pf6N2E2_3677 0.73 -3.5
4,286,111 - Pf6N2E2_3677 0.73 -2.0
4,286,536 + Pf6N2E2_3677 0.89 -0.3
4,286,552 - Pf6N2E2_3677 0.90 -2.4
4,286,552 - Pf6N2E2_3677 0.90 -0.5
4,286,841 + +1.6
4,286,841 + -1.7
4,286,841 + +0.9
4,286,843 + -1.6
4,286,843 + -0.3
4,286,843 + +1.0
4,286,844 - +0.5
4,286,881 - +0.6
4,286,881 - +0.6
4,286,881 - -0.8
4,287,181 + Pf6N2E2_3678 0.41 -0.7
4,287,181 + Pf6N2E2_3678 0.41 +0.7
4,287,182 - Pf6N2E2_3678 0.41 -0.1
4,287,182 - Pf6N2E2_3678 0.41 -0.6
4,287,235 + Pf6N2E2_3678 0.49 +1.4
4,287,235 + Pf6N2E2_3678 0.49 -0.6
4,287,257 - Pf6N2E2_3678 0.52 +0.8
4,287,257 - Pf6N2E2_3678 0.52 -3.2
4,287,352 + Pf6N2E2_3678 0.67 -1.1
4,287,352 + Pf6N2E2_3678 0.67 +0.9
4,287,352 + Pf6N2E2_3678 0.67 -0.6
4,287,352 + Pf6N2E2_3678 0.67 -0.4
4,287,352 + Pf6N2E2_3678 0.67 +0.8
4,287,352 + Pf6N2E2_3678 0.67 +0.4
4,287,353 - Pf6N2E2_3678 0.67 -0.3
4,287,353 - Pf6N2E2_3678 0.67 +1.0
4,287,353 - Pf6N2E2_3678 0.67 +0.8
4,287,353 - Pf6N2E2_3678 0.67 +1.7
4,287,472 + Pf6N2E2_3678 0.86 +0.5
4,287,472 + Pf6N2E2_3678 0.86 -1.8
4,287,473 - Pf6N2E2_3678 0.86 +1.3
4,287,487 + Pf6N2E2_3678 0.88 +2.5
4,287,488 - Pf6N2E2_3678 0.88 -1.9
4,287,499 + Pf6N2E2_3678 0.90 -0.0
4,287,523 + -1.3
4,287,523 + -1.7
4,287,523 + -1.7
4,287,524 - -2.0
4,287,635 + -0.5
4,287,635 + +0.3
4,287,641 + -0.1
4,287,641 + +0.7
4,287,641 + -0.3
4,287,642 - +0.3
4,287,642 - +0.4

Or see this region's nucleotide sequence