Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1748

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1746 and Pf6N2E2_1747 are separated by 73 nucleotidesPf6N2E2_1747 and Pf6N2E2_1748 are separated by 116 nucleotidesPf6N2E2_1748 and Pf6N2E2_1749 are separated by 94 nucleotides Pf6N2E2_1746 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 2,059,806 to 2,060,624 _1746 Pf6N2E2_1747 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,060,698 to 2,061,432 _1747 Pf6N2E2_1748 - Putative transport protein, at 2,061,549 to 2,062,715 _1748 Pf6N2E2_1749 - Cyn operon transcriptional activator, at 2,062,810 to 2,063,703 _1749 Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -3 -2 -1 0 1at 2060.701 kb on + strandat 2060.701 kb on + strandat 2060.701 kb on + strandat 2060.702 kb on - strandat 2060.778 kb on - strand, within Pf6N2E2_1747at 2060.856 kb on - strand, within Pf6N2E2_1747at 2061.010 kb on - strand, within Pf6N2E2_1747at 2061.127 kb on + strand, within Pf6N2E2_1747at 2061.270 kb on - strand, within Pf6N2E2_1747at 2061.364 kb on + strandat 2061.365 kb on - strandat 2061.696 kb on + strand, within Pf6N2E2_1748at 2061.697 kb on - strand, within Pf6N2E2_1748at 2062.003 kb on + strand, within Pf6N2E2_1748at 2062.003 kb on + strand, within Pf6N2E2_1748at 2062.004 kb on - strand, within Pf6N2E2_1748at 2062.004 kb on - strand, within Pf6N2E2_1748at 2062.049 kb on - strand, within Pf6N2E2_1748at 2062.203 kb on - strand, within Pf6N2E2_1748at 2062.435 kb on + strand, within Pf6N2E2_1748at 2062.435 kb on + strand, within Pf6N2E2_1748at 2062.435 kb on + strand, within Pf6N2E2_1748at 2062.435 kb on + strand, within Pf6N2E2_1748at 2062.436 kb on - strand, within Pf6N2E2_1748at 2062.436 kb on - strand, within Pf6N2E2_1748at 2062.436 kb on - strand, within Pf6N2E2_1748at 2062.439 kb on - strand, within Pf6N2E2_1748at 2062.439 kb on - strand, within Pf6N2E2_1748at 2062.504 kb on + strand, within Pf6N2E2_1748at 2062.731 kb on + strandat 2062.768 kb on + strandat 2063.032 kb on - strand, within Pf6N2E2_1749at 2063.327 kb on - strand, within Pf6N2E2_1749at 2063.385 kb on - strand, within Pf6N2E2_1749at 2063.385 kb on - strand, within Pf6N2E2_1749at 2063.702 kb on - strandat 2063.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,060,701 + +0.8
2,060,701 + -0.9
2,060,701 + +0.8
2,060,702 - +1.7
2,060,778 - Pf6N2E2_1747 0.11 +0.6
2,060,856 - Pf6N2E2_1747 0.21 -2.4
2,061,010 - Pf6N2E2_1747 0.42 -0.2
2,061,127 + Pf6N2E2_1747 0.58 +0.1
2,061,270 - Pf6N2E2_1747 0.78 -0.8
2,061,364 + -0.1
2,061,365 - -1.5
2,061,696 + Pf6N2E2_1748 0.13 -1.6
2,061,697 - Pf6N2E2_1748 0.13 -0.7
2,062,003 + Pf6N2E2_1748 0.39 -0.2
2,062,003 + Pf6N2E2_1748 0.39 -0.5
2,062,004 - Pf6N2E2_1748 0.39 +0.7
2,062,004 - Pf6N2E2_1748 0.39 +0.3
2,062,049 - Pf6N2E2_1748 0.43 -2.8
2,062,203 - Pf6N2E2_1748 0.56 -1.5
2,062,435 + Pf6N2E2_1748 0.76 -0.1
2,062,435 + Pf6N2E2_1748 0.76 -0.1
2,062,435 + Pf6N2E2_1748 0.76 -0.2
2,062,435 + Pf6N2E2_1748 0.76 -0.4
2,062,436 - Pf6N2E2_1748 0.76 +1.3
2,062,436 - Pf6N2E2_1748 0.76 -0.1
2,062,436 - Pf6N2E2_1748 0.76 -1.5
2,062,439 - Pf6N2E2_1748 0.76 -0.3
2,062,439 - Pf6N2E2_1748 0.76 +1.3
2,062,504 + Pf6N2E2_1748 0.82 -1.9
2,062,731 + -0.2
2,062,768 + -2.1
2,063,032 - Pf6N2E2_1749 0.25 +1.6
2,063,327 - Pf6N2E2_1749 0.58 +0.9
2,063,385 - Pf6N2E2_1749 0.64 -2.2
2,063,385 - Pf6N2E2_1749 0.64 +1.2
2,063,702 - -3.1
2,063,702 - +0.9

Or see this region's nucleotide sequence