Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1746 and Pf6N2E2_1747 are separated by 73 nucleotides Pf6N2E2_1747 and Pf6N2E2_1748 are separated by 116 nucleotides Pf6N2E2_1748 and Pf6N2E2_1749 are separated by 94 nucleotides
Pf6N2E2_1746 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 2,059,806 to 2,060,624
_1746
Pf6N2E2_1747 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,060,698 to 2,061,432
_1747
Pf6N2E2_1748 - Putative transport protein, at 2,061,549 to 2,062,715
_1748
Pf6N2E2_1749 - Cyn operon transcriptional activator, at 2,062,810 to 2,063,703
_1749
Position (kb)
2061
2062
2063 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2060.701 kb on + strand at 2060.701 kb on + strand at 2060.701 kb on + strand at 2060.702 kb on - strand at 2060.778 kb on - strand, within Pf6N2E2_1747 at 2060.856 kb on - strand, within Pf6N2E2_1747 at 2061.010 kb on - strand, within Pf6N2E2_1747 at 2061.127 kb on + strand, within Pf6N2E2_1747 at 2061.270 kb on - strand, within Pf6N2E2_1747 at 2061.364 kb on + strand at 2061.365 kb on - strand at 2061.696 kb on + strand, within Pf6N2E2_1748 at 2061.697 kb on - strand, within Pf6N2E2_1748 at 2062.003 kb on + strand, within Pf6N2E2_1748 at 2062.003 kb on + strand, within Pf6N2E2_1748 at 2062.004 kb on - strand, within Pf6N2E2_1748 at 2062.004 kb on - strand, within Pf6N2E2_1748 at 2062.049 kb on - strand, within Pf6N2E2_1748 at 2062.203 kb on - strand, within Pf6N2E2_1748 at 2062.435 kb on + strand, within Pf6N2E2_1748 at 2062.435 kb on + strand, within Pf6N2E2_1748 at 2062.435 kb on + strand, within Pf6N2E2_1748 at 2062.435 kb on + strand, within Pf6N2E2_1748 at 2062.436 kb on - strand, within Pf6N2E2_1748 at 2062.436 kb on - strand, within Pf6N2E2_1748 at 2062.436 kb on - strand, within Pf6N2E2_1748 at 2062.439 kb on - strand, within Pf6N2E2_1748 at 2062.439 kb on - strand, within Pf6N2E2_1748 at 2062.504 kb on + strand, within Pf6N2E2_1748 at 2062.731 kb on + strand at 2062.768 kb on + strand at 2063.032 kb on - strand, within Pf6N2E2_1749 at 2063.327 kb on - strand, within Pf6N2E2_1749 at 2063.385 kb on - strand, within Pf6N2E2_1749 at 2063.385 kb on - strand, within Pf6N2E2_1749 at 2063.702 kb on - strand at 2063.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,060,701 + +0.8 2,060,701 + -0.9 2,060,701 + +0.8 2,060,702 - +1.7 2,060,778 - Pf6N2E2_1747 0.11 +0.6 2,060,856 - Pf6N2E2_1747 0.21 -2.4 2,061,010 - Pf6N2E2_1747 0.42 -0.2 2,061,127 + Pf6N2E2_1747 0.58 +0.1 2,061,270 - Pf6N2E2_1747 0.78 -0.8 2,061,364 + -0.1 2,061,365 - -1.5 2,061,696 + Pf6N2E2_1748 0.13 -1.6 2,061,697 - Pf6N2E2_1748 0.13 -0.7 2,062,003 + Pf6N2E2_1748 0.39 -0.2 2,062,003 + Pf6N2E2_1748 0.39 -0.5 2,062,004 - Pf6N2E2_1748 0.39 +0.7 2,062,004 - Pf6N2E2_1748 0.39 +0.3 2,062,049 - Pf6N2E2_1748 0.43 -2.8 2,062,203 - Pf6N2E2_1748 0.56 -1.5 2,062,435 + Pf6N2E2_1748 0.76 -0.1 2,062,435 + Pf6N2E2_1748 0.76 -0.1 2,062,435 + Pf6N2E2_1748 0.76 -0.2 2,062,435 + Pf6N2E2_1748 0.76 -0.4 2,062,436 - Pf6N2E2_1748 0.76 +1.3 2,062,436 - Pf6N2E2_1748 0.76 -0.1 2,062,436 - Pf6N2E2_1748 0.76 -1.5 2,062,439 - Pf6N2E2_1748 0.76 -0.3 2,062,439 - Pf6N2E2_1748 0.76 +1.3 2,062,504 + Pf6N2E2_1748 0.82 -1.9 2,062,731 + -0.2 2,062,768 + -2.1 2,063,032 - Pf6N2E2_1749 0.25 +1.6 2,063,327 - Pf6N2E2_1749 0.58 +0.9 2,063,385 - Pf6N2E2_1749 0.64 -2.2 2,063,385 - Pf6N2E2_1749 0.64 +1.2 2,063,702 - -3.1 2,063,702 - +0.9
Or see this region's nucleotide sequence