Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3725 and HP15_3726 are separated by 40 nucleotides HP15_3726 and HP15_3727 are separated by 60 nucleotides HP15_3727 and HP15_3728 are separated by 33 nucleotides
HP15_3725: HP15_3725 - PTS system, fructose-specific IIBC component, at 3,942,846 to 3,944,609
_3725
HP15_3726: HP15_3726 - glyoxalase/bleomycin resistance protein/dioxygenase, at 3,944,650 to 3,945,021
_3726
HP15_3727: HP15_3727 - diguanylate cyclase (GGDEF domain), at 3,945,082 to 3,946,371
_3727
HP15_3728: HP15_3728 - sensory box/GGDEF/GAF/EAL domain protein, at 3,946,405 to 3,948,771
_3728
Position (kb)
3945
3946
3947 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3944.127 kb on - strand, within HP15_3725 at 3944.159 kb on - strand, within HP15_3725 at 3944.216 kb on - strand, within HP15_3725 at 3944.245 kb on + strand, within HP15_3725 at 3944.317 kb on - strand, within HP15_3725 at 3944.355 kb on - strand, within HP15_3725 at 3944.401 kb on - strand, within HP15_3725 at 3944.443 kb on - strand at 3944.450 kb on - strand at 3944.450 kb on - strand at 3944.544 kb on - strand at 3944.625 kb on + strand at 3944.630 kb on + strand at 3944.633 kb on - strand at 3944.638 kb on - strand at 3944.705 kb on + strand, within HP15_3726 at 3944.713 kb on - strand, within HP15_3726 at 3944.760 kb on + strand, within HP15_3726 at 3944.760 kb on + strand, within HP15_3726 at 3944.796 kb on + strand, within HP15_3726 at 3944.814 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.888 kb on + strand, within HP15_3726 at 3944.896 kb on - strand, within HP15_3726 at 3944.934 kb on + strand, within HP15_3726 at 3944.997 kb on + strand at 3945.137 kb on + strand at 3945.176 kb on + strand at 3945.182 kb on + strand at 3945.271 kb on + strand, within HP15_3727 at 3945.276 kb on + strand, within HP15_3727 at 3945.316 kb on - strand, within HP15_3727 at 3945.318 kb on + strand, within HP15_3727 at 3945.354 kb on - strand, within HP15_3727 at 3945.415 kb on + strand, within HP15_3727 at 3945.469 kb on - strand, within HP15_3727 at 3945.698 kb on + strand, within HP15_3727 at 3945.707 kb on - strand, within HP15_3727 at 3945.768 kb on - strand, within HP15_3727 at 3945.784 kb on + strand, within HP15_3727 at 3945.792 kb on - strand, within HP15_3727 at 3945.848 kb on - strand, within HP15_3727 at 3945.860 kb on - strand, within HP15_3727 at 3945.872 kb on - strand, within HP15_3727 at 3945.986 kb on - strand, within HP15_3727 at 3946.142 kb on + strand, within HP15_3727 at 3946.150 kb on - strand, within HP15_3727 at 3946.218 kb on - strand, within HP15_3727 at 3946.218 kb on - strand, within HP15_3727 at 3946.234 kb on - strand, within HP15_3727 at 3946.242 kb on + strand, within HP15_3727 at 3946.244 kb on + strand at 3946.244 kb on - strand at 3946.250 kb on - strand at 3946.290 kb on - strand at 3946.365 kb on + strand at 3946.391 kb on - strand at 3946.498 kb on - strand at 3946.556 kb on - strand at 3946.590 kb on - strand at 3946.696 kb on - strand, within HP15_3728 at 3946.751 kb on + strand, within HP15_3728 at 3946.842 kb on - strand, within HP15_3728 at 3946.908 kb on - strand, within HP15_3728 at 3946.931 kb on + strand, within HP15_3728 at 3946.932 kb on - strand, within HP15_3728 at 3946.949 kb on - strand, within HP15_3728 at 3946.998 kb on - strand, within HP15_3728 at 3947.048 kb on + strand, within HP15_3728 at 3947.048 kb on + strand, within HP15_3728 at 3947.235 kb on + strand, within HP15_3728 at 3947.235 kb on + strand, within HP15_3728 at 3947.243 kb on - strand, within HP15_3728 at 3947.278 kb on - strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.337 kb on + strand, within HP15_3728 at 3947.345 kb on - strand, within HP15_3728 at 3947.345 kb on - strand, within HP15_3728 at 3947.345 kb on - strand, within HP15_3728 at 3947.345 kb on - strand, within HP15_3728 at 3947.345 kb on - strand, within HP15_3728
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,944,127 - HP15_3725 0.73 +1.1 3,944,159 - HP15_3725 0.74 +0.0 3,944,216 - HP15_3725 0.78 -0.3 3,944,245 + HP15_3725 0.79 -0.2 3,944,317 - HP15_3725 0.83 -0.2 3,944,355 - HP15_3725 0.86 +1.1 3,944,401 - HP15_3725 0.88 -2.1 3,944,443 - +0.1 3,944,450 - +0.0 3,944,450 - -0.3 3,944,544 - +0.2 3,944,625 + +0.4 3,944,630 + -0.5 3,944,633 - -0.1 3,944,638 - +0.1 3,944,705 + HP15_3726 0.15 +1.0 3,944,713 - HP15_3726 0.17 -0.1 3,944,760 + HP15_3726 0.30 -1.1 3,944,760 + HP15_3726 0.30 +0.1 3,944,796 + HP15_3726 0.39 +0.3 3,944,814 + HP15_3726 0.44 -0.1 3,944,888 + HP15_3726 0.64 -0.0 3,944,888 + HP15_3726 0.64 -2.0 3,944,888 + HP15_3726 0.64 -0.9 3,944,896 - HP15_3726 0.66 -0.2 3,944,934 + HP15_3726 0.76 -0.3 3,944,997 + +0.4 3,945,137 + -1.0 3,945,176 + +0.1 3,945,182 + +0.7 3,945,271 + HP15_3727 0.15 -0.1 3,945,276 + HP15_3727 0.15 -0.6 3,945,316 - HP15_3727 0.18 +0.8 3,945,318 + HP15_3727 0.18 +0.2 3,945,354 - HP15_3727 0.21 +1.6 3,945,415 + HP15_3727 0.26 +0.2 3,945,469 - HP15_3727 0.30 +1.7 3,945,698 + HP15_3727 0.48 +0.1 3,945,707 - HP15_3727 0.48 -0.1 3,945,768 - HP15_3727 0.53 +2.7 3,945,784 + HP15_3727 0.54 +0.0 3,945,792 - HP15_3727 0.55 -0.3 3,945,848 - HP15_3727 0.59 +0.6 3,945,860 - HP15_3727 0.60 -0.6 3,945,872 - HP15_3727 0.61 +0.3 3,945,986 - HP15_3727 0.70 +0.1 3,946,142 + HP15_3727 0.82 -0.7 3,946,150 - HP15_3727 0.83 +0.6 3,946,218 - HP15_3727 0.88 +0.1 3,946,218 - HP15_3727 0.88 +1.9 3,946,234 - HP15_3727 0.89 +0.2 3,946,242 + HP15_3727 0.90 +0.6 3,946,244 + -0.6 3,946,244 - -1.4 3,946,250 - +0.2 3,946,290 - -0.3 3,946,365 + -0.1 3,946,391 - +0.5 3,946,498 - +0.4 3,946,556 - +0.5 3,946,590 - -0.2 3,946,696 - HP15_3728 0.12 +0.3 3,946,751 + HP15_3728 0.15 +0.3 3,946,842 - HP15_3728 0.18 +0.1 3,946,908 - HP15_3728 0.21 +0.6 3,946,931 + HP15_3728 0.22 -1.6 3,946,932 - HP15_3728 0.22 +0.4 3,946,949 - HP15_3728 0.23 +0.1 3,946,998 - HP15_3728 0.25 +0.5 3,947,048 + HP15_3728 0.27 +0.3 3,947,048 + HP15_3728 0.27 +0.4 3,947,235 + HP15_3728 0.35 +0.3 3,947,235 + HP15_3728 0.35 +1.2 3,947,243 - HP15_3728 0.35 +0.5 3,947,278 - HP15_3728 0.37 +0.1 3,947,337 + HP15_3728 0.39 +1.1 3,947,337 + HP15_3728 0.39 -0.3 3,947,337 + HP15_3728 0.39 -0.1 3,947,337 + HP15_3728 0.39 +0.0 3,947,337 + HP15_3728 0.39 -0.1 3,947,337 + HP15_3728 0.39 +0.8 3,947,337 + HP15_3728 0.39 +0.0 3,947,345 - HP15_3728 0.40 -0.9 3,947,345 - HP15_3728 0.40 +0.3 3,947,345 - HP15_3728 0.40 +0.1 3,947,345 - HP15_3728 0.40 +0.2 3,947,345 - HP15_3728 0.40 -0.9
Or see this region's nucleotide sequence