Strain Fitness in Marinobacter adhaerens HP15 around HP15_2697

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2696 and HP15_2697 are separated by 327 nucleotidesHP15_2697 and HP15_2698 are separated by 17 nucleotidesHP15_2698 and HP15_2699 are separated by 12 nucleotides HP15_2696: HP15_2696 - phenylacetate-CoA ligase, at 2,848,384 to 2,849,694 _2696 HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014 _2697 HP15_2698: HP15_2698 - phenylacetate-CoA oxygenase, PaaH subunit, at 2,851,032 to 2,851,313 _2698 HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090 _2699 Position (kb) 2850 2851 2852Strain fitness (log2 ratio) -2 -1 0 1at 2849.046 kb on + strand, within HP15_2696at 2849.100 kb on + strand, within HP15_2696at 2849.134 kb on - strand, within HP15_2696at 2849.254 kb on + strand, within HP15_2696at 2849.256 kb on - strand, within HP15_2696at 2849.303 kb on + strand, within HP15_2696at 2849.311 kb on - strand, within HP15_2696at 2849.491 kb on + strand, within HP15_2696at 2849.545 kb on + strand, within HP15_2696at 2849.616 kb on + strandat 2849.634 kb on - strandat 2849.689 kb on - strandat 2849.716 kb on - strandat 2849.814 kb on - strandat 2849.976 kb on + strandat 2849.985 kb on + strandat 2849.993 kb on - strandat 2850.001 kb on - strandat 2850.065 kb on + strandat 2850.180 kb on + strand, within HP15_2697at 2850.241 kb on - strand, within HP15_2697at 2850.305 kb on + strand, within HP15_2697at 2850.323 kb on - strand, within HP15_2697at 2850.923 kb on - strandat 2850.967 kb on + strandat 2851.100 kb on - strand, within HP15_2698at 2851.178 kb on - strand, within HP15_2698at 2851.307 kb on + strandat 2851.315 kb on - strandat 2851.315 kb on - strandat 2851.356 kb on + strandat 2851.453 kb on + strand, within HP15_2699at 2851.592 kb on + strand, within HP15_2699at 2851.939 kb on - strand, within HP15_2699at 2851.959 kb on - strand, within HP15_2699at 2851.988 kb on + strand, within HP15_2699

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,849,046 + HP15_2696 0.50 +0.3
2,849,100 + HP15_2696 0.55 +0.1
2,849,134 - HP15_2696 0.57 +0.5
2,849,254 + HP15_2696 0.66 +1.0
2,849,256 - HP15_2696 0.67 +0.3
2,849,303 + HP15_2696 0.70 +0.6
2,849,311 - HP15_2696 0.71 +0.0
2,849,491 + HP15_2696 0.84 -1.4
2,849,545 + HP15_2696 0.89 -0.2
2,849,616 + -0.0
2,849,634 - +0.3
2,849,689 - +0.1
2,849,716 - -0.1
2,849,814 - -0.1
2,849,976 + -0.3
2,849,985 + -0.1
2,849,993 - +0.0
2,850,001 - -2.3
2,850,065 + +0.3
2,850,180 + HP15_2697 0.16 +0.3
2,850,241 - HP15_2697 0.22 -1.8
2,850,305 + HP15_2697 0.28 -0.2
2,850,323 - HP15_2697 0.30 +0.0
2,850,923 - +0.5
2,850,967 + +0.2
2,851,100 - HP15_2698 0.24 +0.3
2,851,178 - HP15_2698 0.52 +1.5
2,851,307 + -0.3
2,851,315 - +0.1
2,851,315 - +0.2
2,851,356 + -0.8
2,851,453 + HP15_2699 0.17 +1.0
2,851,592 + HP15_2699 0.35 -0.6
2,851,939 - HP15_2699 0.80 -1.4
2,851,959 - HP15_2699 0.83 +0.1
2,851,988 + HP15_2699 0.87 -0.0

Or see this region's nucleotide sequence