Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23575 and BWI76_RS23580 are separated by 12 nucleotides BWI76_RS23580 and BWI76_RS23585 are separated by 14 nucleotides BWI76_RS23585 and BWI76_RS23590 are separated by 28 nucleotides
BWI76_RS23575: BWI76_RS23575 - hypothetical protein, at 4,917,635 to 4,918,165
_RS23575
BWI76_RS23580: BWI76_RS23580 - hypothetical protein, at 4,918,178 to 4,918,678
_RS23580
BWI76_RS23585: BWI76_RS23585 - minor component of type 1 fimbriae, at 4,918,693 to 4,919,655
_RS23585
BWI76_RS23590: BWI76_RS23590 - EAL domain-containing protein, at 4,919,684 to 4,921,120
_RS23590
Position (kb) 4918
4919
4920 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4918.012 kb on + strand, within BWI76_RS23575 at 4918.053 kb on + strand, within BWI76_RS23575 at 4918.063 kb on + strand at 4918.088 kb on + strand, within BWI76_RS23575 at 4918.196 kb on - strand at 4918.204 kb on - strand at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.346 kb on - strand, within BWI76_RS23580 at 4918.463 kb on - strand, within BWI76_RS23580 at 4918.492 kb on + strand, within BWI76_RS23580 at 4918.661 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.737 kb on + strand at 4918.740 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.745 kb on - strand at 4918.785 kb on + strand at 4918.869 kb on + strand, within BWI76_RS23585 at 4918.891 kb on + strand, within BWI76_RS23585 at 4918.987 kb on + strand, within BWI76_RS23585 at 4919.144 kb on + strand, within BWI76_RS23585 at 4919.162 kb on - strand, within BWI76_RS23585 at 4919.165 kb on - strand, within BWI76_RS23585 at 4919.329 kb on - strand, within BWI76_RS23585 at 4919.373 kb on - strand, within BWI76_RS23585 at 4919.404 kb on - strand, within BWI76_RS23585 at 4919.488 kb on - strand, within BWI76_RS23585 at 4919.501 kb on + strand, within BWI76_RS23585 at 4919.658 kb on + strand at 4919.714 kb on - strand at 4919.867 kb on - strand, within BWI76_RS23590 at 4919.937 kb on + strand, within BWI76_RS23590 at 4920.014 kb on - strand, within BWI76_RS23590 at 4920.035 kb on - strand, within BWI76_RS23590 at 4920.103 kb on - strand, within BWI76_RS23590 at 4920.270 kb on - strand, within BWI76_RS23590 at 4920.518 kb on + strand, within BWI76_RS23590 at 4920.559 kb on - strand, within BWI76_RS23590
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 4,918,012 + BWI76_RS23575 0.71 +0.5 4,918,053 + BWI76_RS23575 0.79 +0.0 4,918,063 + -0.8 4,918,088 + BWI76_RS23575 0.85 -1.9 4,918,196 - +0.6 4,918,204 - -0.2 4,918,346 - BWI76_RS23580 0.34 -0.1 4,918,346 - BWI76_RS23580 0.34 -0.1 4,918,463 - BWI76_RS23580 0.57 +0.9 4,918,492 + BWI76_RS23580 0.63 +0.9 4,918,661 + +0.8 4,918,737 + -1.3 4,918,737 + -1.2 4,918,737 + -0.0 4,918,737 + +1.6 4,918,737 + +0.7 4,918,740 - -0.5 4,918,745 - -1.5 4,918,745 - -1.3 4,918,745 - +1.2 4,918,745 - -0.9 4,918,745 - -0.1 4,918,745 - +0.2 4,918,745 - +1.3 4,918,785 + -1.0 4,918,869 + BWI76_RS23585 0.18 +1.1 4,918,891 + BWI76_RS23585 0.21 +0.2 4,918,987 + BWI76_RS23585 0.31 -0.1 4,919,144 + BWI76_RS23585 0.47 -0.6 4,919,162 - BWI76_RS23585 0.49 -2.1 4,919,165 - BWI76_RS23585 0.49 -1.7 4,919,329 - BWI76_RS23585 0.66 -0.1 4,919,373 - BWI76_RS23585 0.71 -1.0 4,919,404 - BWI76_RS23585 0.74 +1.1 4,919,488 - BWI76_RS23585 0.83 -0.8 4,919,501 + BWI76_RS23585 0.84 -3.1 4,919,658 + -0.6 4,919,714 - -0.1 4,919,867 - BWI76_RS23590 0.13 -0.4 4,919,937 + BWI76_RS23590 0.18 -0.3 4,920,014 - BWI76_RS23590 0.23 +0.6 4,920,035 - BWI76_RS23590 0.24 -0.7 4,920,103 - BWI76_RS23590 0.29 -1.0 4,920,270 - BWI76_RS23590 0.41 -1.0 4,920,518 + BWI76_RS23590 0.58 -0.2 4,920,559 - BWI76_RS23590 0.61 +0.5
Or see this region's nucleotide sequence