Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10935 and BWI76_RS10940 are separated by 66 nucleotides BWI76_RS10940 and BWI76_RS10945 are separated by 0 nucleotides BWI76_RS10945 and BWI76_RS10950 are separated by 79 nucleotides
BWI76_RS10935: BWI76_RS10935 - glucan biosynthesis glucosyltransferase H, at 2,309,147 to 2,311,675
_RS10935
BWI76_RS10940: BWI76_RS10940 - YceK/YidQ family lipoprotein, at 2,311,742 to 2,311,969
_RS10940
BWI76_RS10945: BWI76_RS10945 - SecY/SecA suppressor protein, at 2,311,970 to 2,312,356
_RS10945
BWI76_RS10950: BWI76_RS10950 - MFS transporter, at 2,312,436 to 2,313,686
_RS10950
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-2
-1
0
1 at 2311.155 kb on - strand, within BWI76_RS10935 at 2312.304 kb on - strand, within BWI76_RS10945 at 2312.539 kb on - strand at 2313.263 kb on + strand, within BWI76_RS10950 at 2313.339 kb on + strand, within BWI76_RS10950 at 2313.356 kb on + strand, within BWI76_RS10950
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 2,311,155 - BWI76_RS10935 0.79 +1.3 2,312,304 - BWI76_RS10945 0.86 -2.0 2,312,539 - -1.3 2,313,263 + BWI76_RS10950 0.66 -0.2 2,313,339 + BWI76_RS10950 0.72 -1.3 2,313,356 + BWI76_RS10950 0.74 -0.1
Or see this region's nucleotide sequence