Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10425 and BWI76_RS10430 are separated by 107 nucleotides BWI76_RS10430 and BWI76_RS10435 are separated by 44 nucleotides BWI76_RS10435 and BWI76_RS10440 are separated by 7 nucleotides
BWI76_RS10425: BWI76_RS10425 - AIG2 family protein, at 2,204,434 to 2,204,769
_RS10425
BWI76_RS10430: BWI76_RS10430 - thiol:disulfide interchange protein DsbG, at 2,204,877 to 2,205,635
_RS10430
BWI76_RS10435: BWI76_RS10435 - suppressor for copper-sensitivity C, at 2,205,680 to 2,206,402
_RS10435
BWI76_RS10440: BWI76_RS10440 - protein-disulfide reductase, at 2,206,410 to 2,208,434
_RS10440
Position (kb)
2205
2206
2207 Strain fitness (log2 ratio)
-2
-1
0
1 at 2204.744 kb on - strand at 2205.247 kb on + strand, within BWI76_RS10430 at 2205.360 kb on + strand, within BWI76_RS10430 at 2205.445 kb on + strand, within BWI76_RS10430 at 2205.491 kb on - strand, within BWI76_RS10430 at 2205.589 kb on - strand at 2205.739 kb on - strand at 2205.802 kb on + strand, within BWI76_RS10435 at 2206.100 kb on + strand, within BWI76_RS10435 at 2206.108 kb on - strand, within BWI76_RS10435 at 2206.505 kb on + strand at 2206.705 kb on + strand, within BWI76_RS10440 at 2206.789 kb on + strand, within BWI76_RS10440 at 2207.397 kb on - strand, within BWI76_RS10440
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 2,204,744 - -0.7 2,205,247 + BWI76_RS10430 0.49 -0.0 2,205,360 + BWI76_RS10430 0.64 -0.3 2,205,445 + BWI76_RS10430 0.75 -1.1 2,205,491 - BWI76_RS10430 0.81 +0.1 2,205,589 - +0.8 2,205,739 - -0.1 2,205,802 + BWI76_RS10435 0.17 -0.7 2,206,100 + BWI76_RS10435 0.58 -2.4 2,206,108 - BWI76_RS10435 0.59 -1.5 2,206,505 + +0.3 2,206,705 + BWI76_RS10440 0.15 -0.3 2,206,789 + BWI76_RS10440 0.19 +0.6 2,207,397 - BWI76_RS10440 0.49 -0.7
Or see this region's nucleotide sequence