Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08850 and BWI76_RS08855 overlap by 4 nucleotides BWI76_RS08855 and BWI76_RS08860 are separated by 143 nucleotides BWI76_RS08860 and BWI76_RS08865 overlap by 39 nucleotides
BWI76_RS08850: BWI76_RS08850 - cardiolipin synthase B, at 1,863,127 to 1,864,371
_RS08850
BWI76_RS08855: BWI76_RS08855 - endonuclease/exonuclease/phosphatase, at 1,864,368 to 1,865,117
_RS08855
BWI76_RS08860: BWI76_RS08860 - hypothetical protein, at 1,865,261 to 1,865,671
_RS08860
BWI76_RS08865: BWI76_RS08865 - ABC transporter inner membrane, at 1,865,633 to 1,866,739
_RS08865
Position (kb)
1864
1865
1866 Strain fitness (log2 ratio)
-2
-1
0
1 at 1863.499 kb on - strand, within BWI76_RS08850 at 1864.152 kb on + strand, within BWI76_RS08850 at 1864.207 kb on - strand, within BWI76_RS08850 at 1864.490 kb on - strand, within BWI76_RS08855 at 1864.572 kb on - strand, within BWI76_RS08855 at 1864.634 kb on + strand, within BWI76_RS08855 at 1865.569 kb on - strand, within BWI76_RS08860
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 1,863,499 - BWI76_RS08850 0.30 -0.6 1,864,152 + BWI76_RS08850 0.82 -0.4 1,864,207 - BWI76_RS08850 0.87 -0.2 1,864,490 - BWI76_RS08855 0.16 -1.8 1,864,572 - BWI76_RS08855 0.27 -1.0 1,864,634 + BWI76_RS08855 0.35 -1.9 1,865,569 - BWI76_RS08860 0.75 -0.6
Or see this region's nucleotide sequence