Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04590 and BWI76_RS04595 are separated by 337 nucleotides BWI76_RS04595 and BWI76_RS04600 are separated by 128 nucleotides BWI76_RS04600 and BWI76_RS04605 overlap by 14 nucleotides
BWI76_RS04590: BWI76_RS04590 - ribulokinase, at 954,731 to 956,440
_RS04590
BWI76_RS04595: BWI76_RS04595 - DNA-binding transcriptional regulator AraC, at 956,778 to 957,623
_RS04595
BWI76_RS04600: BWI76_RS04600 - inner membrane protein, at 957,752 to 958,519
_RS04600
BWI76_RS04605: BWI76_RS04605 - thiamine ABC transporter ATP-binding protein, at 958,506 to 959,207
_RS04605
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1 at 955.911 kb on - strand, within BWI76_RS04590 at 956.018 kb on - strand, within BWI76_RS04590 at 956.029 kb on + strand, within BWI76_RS04590 at 956.139 kb on + strand, within BWI76_RS04590 at 956.223 kb on - strand, within BWI76_RS04590 at 956.310 kb on + strand at 956.352 kb on - strand at 956.484 kb on + strand at 956.487 kb on - strand at 956.539 kb on - strand at 956.749 kb on + strand at 956.908 kb on + strand, within BWI76_RS04595 at 956.916 kb on - strand, within BWI76_RS04595 at 956.921 kb on - strand, within BWI76_RS04595 at 956.966 kb on + strand, within BWI76_RS04595 at 957.063 kb on + strand, within BWI76_RS04595 at 957.197 kb on - strand, within BWI76_RS04595 at 957.217 kb on + strand, within BWI76_RS04595 at 957.225 kb on - strand, within BWI76_RS04595 at 957.302 kb on + strand, within BWI76_RS04595 at 957.487 kb on - strand, within BWI76_RS04595 at 957.491 kb on + strand, within BWI76_RS04595 at 957.710 kb on - strand at 957.711 kb on + strand at 957.882 kb on + strand, within BWI76_RS04600 at 957.910 kb on + strand, within BWI76_RS04600 at 958.400 kb on + strand, within BWI76_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 955,911 - BWI76_RS04590 0.69 -1.5 956,018 - BWI76_RS04590 0.75 -0.8 956,029 + BWI76_RS04590 0.76 +0.5 956,139 + BWI76_RS04590 0.82 -0.3 956,223 - BWI76_RS04590 0.87 -1.7 956,310 + +0.1 956,352 - -0.6 956,484 + -0.7 956,487 - -0.9 956,539 - -0.9 956,749 + -1.7 956,908 + BWI76_RS04595 0.15 +0.2 956,916 - BWI76_RS04595 0.16 +0.4 956,921 - BWI76_RS04595 0.17 +0.3 956,966 + BWI76_RS04595 0.22 -2.5 957,063 + BWI76_RS04595 0.34 -1.4 957,197 - BWI76_RS04595 0.50 -1.4 957,217 + BWI76_RS04595 0.52 -1.6 957,225 - BWI76_RS04595 0.53 +0.1 957,302 + BWI76_RS04595 0.62 -1.4 957,487 - BWI76_RS04595 0.84 -1.3 957,491 + BWI76_RS04595 0.84 -1.2 957,710 - +0.3 957,711 + -0.8 957,882 + BWI76_RS04600 0.17 -1.1 957,910 + BWI76_RS04600 0.21 -0.8 958,400 + BWI76_RS04600 0.84 -1.1
Or see this region's nucleotide sequence