Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03850

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03840 and BWI76_RS03845 are separated by 70 nucleotidesBWI76_RS03845 and BWI76_RS03850 are separated by 10 nucleotidesBWI76_RS03850 and BWI76_RS03855 are separated by 136 nucleotidesBWI76_RS03855 and BWI76_RS03860 are separated by 12 nucleotides BWI76_RS03840: BWI76_RS03840 - 4-hydroxyphenylacetate permease, at 794,732 to 796,108 _RS03840 BWI76_RS03845: BWI76_RS03845 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 796,179 to 796,971 _RS03845 BWI76_RS03850: BWI76_RS03850 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 796,982 to 797,785 _RS03850 BWI76_RS03855: BWI76_RS03855 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 797,922 to 798,302 _RS03855 BWI76_RS03860: BWI76_RS03860 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 798,315 to 799,172 _RS03860 Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2at 796.106 kb on + strandat 796.161 kb on + strandat 796.299 kb on + strand, within BWI76_RS03845at 796.307 kb on - strand, within BWI76_RS03845at 796.401 kb on + strand, within BWI76_RS03845at 796.553 kb on + strand, within BWI76_RS03845at 796.780 kb on + strand, within BWI76_RS03845at 796.949 kb on - strandat 797.175 kb on - strand, within BWI76_RS03850at 797.241 kb on - strand, within BWI76_RS03850at 797.440 kb on - strand, within BWI76_RS03850at 797.544 kb on + strand, within BWI76_RS03850at 797.552 kb on - strandat 797.769 kb on - strandat 797.849 kb on - strandat 798.231 kb on - strand, within BWI76_RS03855at 798.313 kb on + strandat 798.343 kb on + strandat 798.496 kb on + strand, within BWI76_RS03860at 798.504 kb on - strand, within BWI76_RS03860at 798.732 kb on - strand, within BWI76_RS03860

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
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796,106 + +0.2
796,161 + +0.3
796,299 + BWI76_RS03845 0.15 -0.9
796,307 - BWI76_RS03845 0.16 -2.2
796,401 + BWI76_RS03845 0.28 -0.1
796,553 + BWI76_RS03845 0.47 +0.4
796,780 + BWI76_RS03845 0.76 -0.0
796,949 - +1.1
797,175 - BWI76_RS03850 0.24 -2.3
797,241 - BWI76_RS03850 0.32 -0.6
797,440 - BWI76_RS03850 0.57 -0.8
797,544 + BWI76_RS03850 0.70 -2.4
797,552 - +2.6
797,769 - -0.5
797,849 - -0.8
798,231 - BWI76_RS03855 0.81 -0.2
798,313 + -0.5
798,343 + +0.1
798,496 + BWI76_RS03860 0.21 -2.1
798,504 - BWI76_RS03860 0.22 +0.8
798,732 - BWI76_RS03860 0.49 +0.1

Or see this region's nucleotide sequence