Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03580 and BWI76_RS03585 are separated by 15 nucleotides BWI76_RS03585 and BWI76_RS03590 are separated by 26 nucleotides
BWI76_RS03580: BWI76_RS03580 - iron-containing alcohol dehydrogenase, at 742,866 to 744,008
_RS03580
BWI76_RS03585: BWI76_RS03585 - ethanolamine utilization protein EutN, at 744,024 to 744,281
_RS03585
BWI76_RS03590: BWI76_RS03590 - acetaldehyde dehydrogenase (acetylating), at 744,308 to 745,909
_RS03590
Position (kb) 744
745 Strain fitness (log2 ratio) -2
-1
0
1 at 743.040 kb on + strand, within BWI76_RS03580 at 743.073 kb on - strand, within BWI76_RS03580 at 743.102 kb on - strand, within BWI76_RS03580 at 743.292 kb on + strand, within BWI76_RS03580 at 743.655 kb on + strand, within BWI76_RS03580 at 743.685 kb on + strand, within BWI76_RS03580 at 743.858 kb on + strand, within BWI76_RS03580 at 744.070 kb on + strand, within BWI76_RS03585 at 744.070 kb on + strand, within BWI76_RS03585 at 744.070 kb on + strand, within BWI76_RS03585 at 744.120 kb on + strand, within BWI76_RS03585 at 744.617 kb on - strand, within BWI76_RS03590 at 744.653 kb on + strand, within BWI76_RS03590 at 744.653 kb on + strand, within BWI76_RS03590 at 744.658 kb on + strand, within BWI76_RS03590 at 744.779 kb on + strand, within BWI76_RS03590 at 744.787 kb on + strand, within BWI76_RS03590 at 744.937 kb on + strand, within BWI76_RS03590 at 744.984 kb on - strand, within BWI76_RS03590 at 745.253 kb on - strand, within BWI76_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 743,040 + BWI76_RS03580 0.15 -1.6 743,073 - BWI76_RS03580 0.18 +0.4 743,102 - BWI76_RS03580 0.21 +0.6 743,292 + BWI76_RS03580 0.37 +0.8 743,655 + BWI76_RS03580 0.69 +0.5 743,685 + BWI76_RS03580 0.72 +0.5 743,858 + BWI76_RS03580 0.87 +0.5 744,070 + BWI76_RS03585 0.18 -0.8 744,070 + BWI76_RS03585 0.18 -0.8 744,070 + BWI76_RS03585 0.18 -2.0 744,120 + BWI76_RS03585 0.37 -1.7 744,617 - BWI76_RS03590 0.19 -0.2 744,653 + BWI76_RS03590 0.22 -1.6 744,653 + BWI76_RS03590 0.22 -0.5 744,658 + BWI76_RS03590 0.22 +0.4 744,779 + BWI76_RS03590 0.29 +0.2 744,787 + BWI76_RS03590 0.30 +0.4 744,937 + BWI76_RS03590 0.39 +0.0 744,984 - BWI76_RS03590 0.42 +1.7 745,253 - BWI76_RS03590 0.59 -0.1
Or see this region's nucleotide sequence