Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01670 and BWI76_RS01675 are separated by 13 nucleotides BWI76_RS01675 and BWI76_RS01680 are separated by 0 nucleotides
BWI76_RS01670: BWI76_RS01670 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 339,957 to 341,699
_RS01670
BWI76_RS01675: BWI76_RS01675 - putative cytoplasmic protein, at 341,713 to 342,126
_RS01675
BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954
_RS01680
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2 at 340.757 kb on + strand, within BWI76_RS01670 at 340.785 kb on + strand, within BWI76_RS01670 at 340.805 kb on + strand, within BWI76_RS01670 at 341.023 kb on + strand, within BWI76_RS01670 at 341.031 kb on - strand, within BWI76_RS01670 at 341.078 kb on - strand, within BWI76_RS01670 at 341.087 kb on - strand, within BWI76_RS01670 at 341.190 kb on - strand, within BWI76_RS01670 at 341.238 kb on - strand, within BWI76_RS01670 at 341.266 kb on + strand, within BWI76_RS01670 at 341.287 kb on + strand, within BWI76_RS01670 at 341.323 kb on + strand, within BWI76_RS01670 at 341.440 kb on + strand, within BWI76_RS01670 at 341.479 kb on - strand, within BWI76_RS01670 at 341.710 kb on + strand at 341.718 kb on - strand at 341.749 kb on - strand at 341.856 kb on - strand at 341.890 kb on - strand, within BWI76_RS01675 at 342.135 kb on + strand at 342.297 kb on - strand, within BWI76_RS01680 at 342.302 kb on - strand, within BWI76_RS01680 at 342.323 kb on - strand, within BWI76_RS01680 at 342.379 kb on - strand, within BWI76_RS01680 at 342.413 kb on - strand, within BWI76_RS01680 at 342.525 kb on + strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.773 kb on + strand, within BWI76_RS01680 at 343.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 340,757 + BWI76_RS01670 0.46 +0.1 340,785 + BWI76_RS01670 0.48 -0.3 340,805 + BWI76_RS01670 0.49 -2.1 341,023 + BWI76_RS01670 0.61 -1.7 341,031 - BWI76_RS01670 0.62 -1.1 341,078 - BWI76_RS01670 0.64 +0.4 341,087 - BWI76_RS01670 0.65 +0.0 341,190 - BWI76_RS01670 0.71 +0.9 341,238 - BWI76_RS01670 0.73 -0.8 341,266 + BWI76_RS01670 0.75 +1.5 341,287 + BWI76_RS01670 0.76 -0.1 341,323 + BWI76_RS01670 0.78 -0.4 341,440 + BWI76_RS01670 0.85 +0.4 341,479 - BWI76_RS01670 0.87 -0.4 341,710 + -0.2 341,718 - -0.8 341,749 - +0.2 341,856 - +1.8 341,890 - BWI76_RS01675 0.43 +0.8 342,135 + -1.3 342,297 - BWI76_RS01680 0.21 +0.7 342,302 - BWI76_RS01680 0.21 +0.3 342,323 - BWI76_RS01680 0.24 -1.2 342,379 - BWI76_RS01680 0.30 -0.5 342,413 - BWI76_RS01680 0.35 -2.2 342,525 + BWI76_RS01680 0.48 +0.3 342,533 - BWI76_RS01680 0.49 -2.1 342,533 - BWI76_RS01680 0.49 +0.0 342,773 + BWI76_RS01680 0.78 +0.2 343,064 - -0.3
Or see this region's nucleotide sequence