Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0087 and DVUA0088 are separated by 188 nucleotides DVUA0088 and DVUA0089 are separated by 492 nucleotides
DVUA0087: DVUA0087 - sensory box histidine kinase (TIGR), at 116,475 to 119,588
DVUA0087
DVUA0088: DVUA0088 - conserved hypothetical protein (TIGR), at 119,777 to 120,796
DVUA0088
DVUA0089: DVUA0089 - hypothetical protein (TIGR), at 121,289 to 121,906
DVUA0089
Position (kb) 119
120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 118.835 kb on + strand, within DVUA0087 at 118.835 kb on + strand, within DVUA0087 at 118.843 kb on - strand, within DVUA0087 at 118.849 kb on - strand, within DVUA0087 at 118.868 kb on + strand, within DVUA0087 at 118.868 kb on + strand, within DVUA0087 at 118.913 kb on - strand, within DVUA0087 at 118.949 kb on + strand, within DVUA0087 at 118.968 kb on + strand, within DVUA0087 at 119.075 kb on + strand, within DVUA0087 at 119.103 kb on - strand, within DVUA0087 at 119.208 kb on - strand, within DVUA0087 at 119.209 kb on - strand, within DVUA0087 at 119.443 kb on + strand at 119.650 kb on - strand at 119.720 kb on - strand at 119.725 kb on - strand at 119.725 kb on - strand at 119.834 kb on + strand at 119.878 kb on - strand at 119.906 kb on + strand, within DVUA0088 at 120.105 kb on + strand, within DVUA0088 at 120.136 kb on - strand, within DVUA0088 at 120.169 kb on + strand, within DVUA0088 at 120.176 kb on + strand, within DVUA0088 at 120.210 kb on + strand, within DVUA0088 at 120.253 kb on + strand, within DVUA0088 at 120.253 kb on + strand, within DVUA0088 at 120.253 kb on + strand, within DVUA0088 at 120.261 kb on - strand, within DVUA0088 at 120.261 kb on - strand, within DVUA0088 at 120.268 kb on + strand, within DVUA0088 at 120.398 kb on + strand, within DVUA0088 at 120.408 kb on - strand, within DVUA0088 at 120.419 kb on + strand, within DVUA0088 at 120.425 kb on - strand, within DVUA0088 at 120.461 kb on - strand, within DVUA0088 at 120.539 kb on + strand, within DVUA0088 at 120.539 kb on + strand, within DVUA0088 at 120.613 kb on + strand, within DVUA0088 at 120.673 kb on + strand, within DVUA0088 at 120.708 kb on + strand at 120.765 kb on + strand at 120.920 kb on + strand at 120.928 kb on - strand at 120.928 kb on - strand at 120.941 kb on + strand at 120.953 kb on + strand at 120.998 kb on - strand at 121.031 kb on - strand at 121.161 kb on + strand at 121.161 kb on + strand at 121.294 kb on - strand at 121.366 kb on - strand, within DVUA0089
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 118,835 + DVUA0087 0.76 -0.5 118,835 + DVUA0087 0.76 -0.4 118,843 - DVUA0087 0.76 +0.0 118,849 - DVUA0087 0.76 +0.0 118,868 + DVUA0087 0.77 -0.2 118,868 + DVUA0087 0.77 +1.4 118,913 - DVUA0087 0.78 +0.1 118,949 + DVUA0087 0.79 -0.1 118,968 + DVUA0087 0.80 -0.8 119,075 + DVUA0087 0.83 +0.9 119,103 - DVUA0087 0.84 -0.1 119,208 - DVUA0087 0.88 -0.3 119,209 - DVUA0087 0.88 -0.1 119,443 + +0.6 119,650 - -0.0 119,720 - +0.0 119,725 - +0.0 119,725 - -0.1 119,834 + -1.1 119,878 - -0.6 119,906 + DVUA0088 0.13 +0.9 120,105 + DVUA0088 0.32 -0.0 120,136 - DVUA0088 0.35 +0.2 120,169 + DVUA0088 0.38 -0.2 120,176 + DVUA0088 0.39 -0.0 120,210 + DVUA0088 0.42 +0.4 120,253 + DVUA0088 0.47 -0.3 120,253 + DVUA0088 0.47 -0.1 120,253 + DVUA0088 0.47 -0.3 120,261 - DVUA0088 0.47 -0.0 120,261 - DVUA0088 0.47 +0.2 120,268 + DVUA0088 0.48 +0.1 120,398 + DVUA0088 0.61 +0.7 120,408 - DVUA0088 0.62 -0.3 120,419 + DVUA0088 0.63 +0.2 120,425 - DVUA0088 0.64 +0.5 120,461 - DVUA0088 0.67 +0.4 120,539 + DVUA0088 0.75 +0.1 120,539 + DVUA0088 0.75 -1.4 120,613 + DVUA0088 0.82 -0.1 120,673 + DVUA0088 0.88 +1.3 120,708 + -0.6 120,765 + -0.1 120,920 + +0.0 120,928 - -0.2 120,928 - -0.7 120,941 + +0.2 120,953 + -0.3 120,998 - +0.1 121,031 - -0.2 121,161 + -2.1 121,161 + -0.1 121,294 - -0.3 121,366 - DVUA0089 0.12 -1.7
Or see this region's nucleotide sequence