Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0030 and DVUA0031 are separated by 694 nucleotides DVUA0031 and DVUA0032 are separated by 124 nucleotides
DVUA0030: DVUA0030 - hypothetical protein (TIGR), at 33,321 to 34,022
DVUA0030
DVUA0031: DVUA0031 - hypothetical protein (TIGR), at 34,717 to 35,583
DVUA0031
DVUA0032: DVUA0032 - hypothetical protein (TIGR), at 35,708 to 36,568
DVUA0032
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.726 kb on + strand, within DVUA0030 at 33.734 kb on - strand, within DVUA0030 at 33.739 kb on - strand, within DVUA0030 at 33.788 kb on + strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.796 kb on - strand, within DVUA0030 at 33.858 kb on - strand, within DVUA0030 at 33.928 kb on + strand, within DVUA0030 at 33.974 kb on + strand at 34.028 kb on + strand at 34.077 kb on + strand at 34.089 kb on - strand at 34.113 kb on + strand at 34.241 kb on + strand at 34.258 kb on + strand at 34.276 kb on - strand at 34.283 kb on - strand at 34.374 kb on - strand at 34.507 kb on + strand at 34.508 kb on - strand at 34.528 kb on + strand at 34.528 kb on + strand at 34.556 kb on + strand at 34.636 kb on - strand at 34.714 kb on + strand at 34.714 kb on + strand at 34.714 kb on + strand at 34.722 kb on - strand at 34.745 kb on + strand at 34.792 kb on - strand at 34.804 kb on + strand, within DVUA0031 at 34.835 kb on - strand, within DVUA0031 at 34.999 kb on - strand, within DVUA0031 at 35.006 kb on + strand, within DVUA0031 at 35.024 kb on - strand, within DVUA0031 at 35.066 kb on + strand, within DVUA0031 at 35.112 kb on + strand, within DVUA0031 at 35.122 kb on + strand, within DVUA0031 at 35.145 kb on + strand, within DVUA0031 at 35.153 kb on - strand, within DVUA0031 at 35.177 kb on + strand, within DVUA0031 at 35.195 kb on - strand, within DVUA0031 at 35.213 kb on + strand, within DVUA0031 at 35.272 kb on + strand, within DVUA0031 at 35.309 kb on - strand, within DVUA0031 at 35.369 kb on - strand, within DVUA0031 at 35.489 kb on + strand, within DVUA0031 at 35.497 kb on - strand at 35.543 kb on + strand at 35.561 kb on - strand at 35.586 kb on + strand at 35.609 kb on + strand at 35.663 kb on + strand at 35.663 kb on + strand at 35.663 kb on + strand at 35.663 kb on + strand at 35.663 kb on + strand at 35.663 kb on + strand at 35.671 kb on - strand at 35.671 kb on - strand at 35.671 kb on - strand at 35.671 kb on - strand at 35.671 kb on - strand at 35.713 kb on - strand at 35.720 kb on - strand at 35.779 kb on + strand at 35.779 kb on + strand at 35.826 kb on + strand, within DVUA0032 at 35.831 kb on + strand, within DVUA0032 at 35.836 kb on + strand, within DVUA0032 at 35.836 kb on + strand, within DVUA0032 at 35.844 kb on - strand, within DVUA0032 at 35.913 kb on - strand, within DVUA0032 at 35.924 kb on + strand, within DVUA0032 at 35.971 kb on + strand, within DVUA0032 at 35.971 kb on + strand, within DVUA0032 at 36.014 kb on - strand, within DVUA0032 at 36.114 kb on + strand, within DVUA0032 at 36.154 kb on + strand, within DVUA0032 at 36.154 kb on + strand, within DVUA0032 at 36.164 kb on + strand, within DVUA0032 at 36.164 kb on + strand, within DVUA0032 at 36.403 kb on + strand, within DVUA0032 at 36.406 kb on - strand, within DVUA0032 at 36.411 kb on - strand, within DVUA0032 at 36.471 kb on + strand, within DVUA0032 at 36.471 kb on + strand, within DVUA0032 at 36.479 kb on - strand, within DVUA0032 at 36.486 kb on + strand at 36.492 kb on + strand at 36.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 33,726 + DVUA0030 0.58 +0.9 33,734 - DVUA0030 0.59 +0.1 33,739 - DVUA0030 0.60 +0.0 33,788 + DVUA0030 0.67 +0.9 33,796 - DVUA0030 0.68 +0.4 33,796 - DVUA0030 0.68 -0.7 33,796 - DVUA0030 0.68 -0.2 33,858 - DVUA0030 0.76 -0.3 33,928 + DVUA0030 0.86 -0.4 33,974 + -1.2 34,028 + -0.2 34,077 + -0.4 34,089 - -0.4 34,113 + -0.0 34,241 + -0.0 34,258 + -0.3 34,276 - +0.5 34,283 - -1.6 34,374 - -0.6 34,507 + -0.4 34,508 - -0.3 34,528 + -0.1 34,528 + +0.1 34,556 + -0.1 34,636 - -1.4 34,714 + +0.2 34,714 + +0.1 34,714 + +0.2 34,722 - -0.9 34,745 + -0.7 34,792 - +1.0 34,804 + DVUA0031 0.10 -0.5 34,835 - DVUA0031 0.14 -0.4 34,999 - DVUA0031 0.33 +0.6 35,006 + DVUA0031 0.33 +0.8 35,024 - DVUA0031 0.35 +0.4 35,066 + DVUA0031 0.40 -0.1 35,112 + DVUA0031 0.46 +0.4 35,122 + DVUA0031 0.47 +0.8 35,145 + DVUA0031 0.49 -0.1 35,153 - DVUA0031 0.50 +0.5 35,177 + DVUA0031 0.53 +1.2 35,195 - DVUA0031 0.55 -0.4 35,213 + DVUA0031 0.57 +0.4 35,272 + DVUA0031 0.64 +0.3 35,309 - DVUA0031 0.68 +0.5 35,369 - DVUA0031 0.75 +0.2 35,489 + DVUA0031 0.89 +0.6 35,497 - -0.4 35,543 + +0.7 35,561 - +0.8 35,586 + -0.3 35,609 + +0.1 35,663 + -0.2 35,663 + -0.5 35,663 + +0.0 35,663 + -0.1 35,663 + +0.0 35,663 + -0.1 35,671 - +0.3 35,671 - -0.7 35,671 - -0.4 35,671 - -1.0 35,671 - -0.5 35,713 - +1.1 35,720 - +0.1 35,779 + -0.1 35,779 + -0.4 35,826 + DVUA0032 0.14 -0.2 35,831 + DVUA0032 0.14 -0.4 35,836 + DVUA0032 0.15 -0.4 35,836 + DVUA0032 0.15 -0.1 35,844 - DVUA0032 0.16 -0.8 35,913 - DVUA0032 0.24 +0.2 35,924 + DVUA0032 0.25 +0.1 35,971 + DVUA0032 0.31 -0.1 35,971 + DVUA0032 0.31 -0.2 36,014 - DVUA0032 0.36 -1.2 36,114 + DVUA0032 0.47 -0.3 36,154 + DVUA0032 0.52 -0.5 36,154 + DVUA0032 0.52 -0.2 36,164 + DVUA0032 0.53 -0.4 36,164 + DVUA0032 0.53 -0.5 36,403 + DVUA0032 0.81 -1.1 36,406 - DVUA0032 0.81 +0.7 36,411 - DVUA0032 0.82 -1.1 36,471 + DVUA0032 0.89 +0.3 36,471 + DVUA0032 0.89 -0.5 36,479 - DVUA0032 0.90 -0.2 36,486 + -0.0 36,492 + -0.6 36,524 + +0.0
Or see this region's nucleotide sequence