Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0092
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
124,224 | + | katA | DVUA0091 | 0.50 | +0.0 |
124,318 | - | katA | DVUA0091 | 0.56 | -0.1 |
124,326 | - | katA | DVUA0091 | 0.57 | +2.2 |
124,395 | + | katA | DVUA0091 | 0.62 | -0.2 |
124,552 | - | katA | DVUA0091 | 0.72 | -1.8 |
124,622 | + | katA | DVUA0091 | 0.77 | -0.4 |
124,627 | - | katA | DVUA0091 | 0.78 | -1.6 |
124,731 | + | katA | DVUA0091 | 0.85 | -0.5 |
124,928 | - | -0.4 | |||
124,951 | + | +0.3 | |||
124,954 | - | -1.3 | |||
125,054 | + | +0.2 | |||
125,054 | + | +0.6 | |||
125,075 | - | -0.1 | |||
125,348 | + | DVUA0092 | 0.37 | +0.3 | |
125,417 | - | DVUA0092 | 0.51 | +0.0 | |
125,424 | + | DVUA0092 | 0.53 | +0.2 | |
125,520 | - | DVUA0092 | 0.73 | +0.1 | |
125,597 | - | DVUA0092 | 0.89 | +0.1 | |
125,629 | - | +0.2 | |||
125,694 | + | -0.4 | |||
125,717 | + | -1.5 | |||
125,725 | - | -0.5 | |||
125,762 | + | -0.4 | |||
125,787 | - | -0.0 | |||
125,791 | + | +0.4 | |||
125,809 | - | +0.4 | |||
125,861 | + | +1.0 | |||
125,965 | - | +1.7 | |||
126,010 | - | DVUA0093 | 0.13 | +0.2 | |
126,013 | + | DVUA0093 | 0.13 | +0.0 | |
126,033 | + | DVUA0093 | 0.14 | +0.2 | |
126,033 | + | DVUA0093 | 0.14 | -0.0 | |
126,058 | - | DVUA0093 | 0.16 | -0.4 | |
126,068 | - | DVUA0093 | 0.17 | -0.1 | |
126,068 | - | DVUA0093 | 0.17 | -0.2 | |
126,142 | + | DVUA0093 | 0.23 | +0.2 | |
126,190 | - | DVUA0093 | 0.26 | +0.0 | |
126,287 | + | DVUA0093 | 0.33 | -0.4 | |
126,373 | + | DVUA0093 | 0.40 | +0.3 | |
126,383 | + | DVUA0093 | 0.41 | -0.0 | |
126,388 | + | DVUA0093 | 0.41 | +0.7 | |
126,396 | - | DVUA0093 | 0.42 | +0.0 | |
126,396 | - | DVUA0093 | 0.42 | -1.2 | |
126,398 | + | DVUA0093 | 0.42 | +0.9 | |
126,474 | - | DVUA0093 | 0.47 | -0.6 | |
126,501 | + | DVUA0093 | 0.49 | -0.3 | |
126,530 | + | DVUA0093 | 0.52 | -0.4 | |
126,550 | - | DVUA0093 | 0.53 | +0.5 | |
126,629 | + | DVUA0093 | 0.59 | -1.6 |
Or see this region's nucleotide sequence