Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt buk and DVU0629 are separated by 142 nucleotides DVU0629 and DVU0630 are separated by 3 nucleotides DVU0630 and DVU0631 are separated by 187 nucleotides
DVU0628: buk - butyrate kinase (TIGR), at 695,062 to 696,180
buk
DVU0629: DVU0629 - transcriptional regulator, TetR family (TIGR), at 696,323 to 696,883
DVU0629
DVU0630: DVU0630 - hypothetical protein (TIGR), at 696,887 to 697,063
DVU0630
DVU0631: DVU0631 - conserved hypothetical protein (TIGR), at 697,251 to 698,816
DVU0631
Position (kb) 696
697 Strain fitness (log2 ratio) -1
0
1
2 at 695.396 kb on - strand, within buk at 695.422 kb on + strand, within buk at 695.460 kb on + strand, within buk at 695.614 kb on + strand, within buk at 695.891 kb on - strand, within buk at 695.922 kb on + strand, within buk at 695.965 kb on + strand, within buk at 695.965 kb on + strand, within buk at 696.005 kb on + strand, within buk at 696.074 kb on + strand at 696.082 kb on - strand at 696.127 kb on - strand at 696.130 kb on + strand at 696.152 kb on + strand at 696.160 kb on - strand at 696.169 kb on + strand at 696.194 kb on - strand at 696.194 kb on - strand at 696.194 kb on - strand at 696.201 kb on + strand at 696.248 kb on + strand at 696.256 kb on - strand at 696.280 kb on + strand at 696.445 kb on - strand, within DVU0629 at 696.451 kb on + strand, within DVU0629 at 696.459 kb on - strand, within DVU0629 at 696.462 kb on + strand, within DVU0629 at 696.633 kb on - strand, within DVU0629 at 696.649 kb on - strand, within DVU0629 at 696.716 kb on - strand, within DVU0629 at 696.863 kb on - strand at 696.916 kb on + strand, within DVU0630 at 696.919 kb on - strand, within DVU0630 at 697.012 kb on - strand, within DVU0630 at 697.182 kb on + strand at 697.182 kb on + strand at 697.182 kb on + strand at 697.182 kb on + strand at 697.197 kb on + strand at 697.236 kb on - strand at 697.347 kb on + strand at 697.430 kb on + strand, within DVU0631 at 697.549 kb on + strand, within DVU0631 at 697.581 kb on + strand, within DVU0631 at 697.777 kb on - strand, within DVU0631 at 697.811 kb on + strand, within DVU0631 at 697.821 kb on + strand, within DVU0631
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 695,396 - buk DVU0628 0.30 +0.3 695,422 + buk DVU0628 0.32 +0.2 695,460 + buk DVU0628 0.36 +0.1 695,614 + buk DVU0628 0.49 +0.2 695,891 - buk DVU0628 0.74 -0.6 695,922 + buk DVU0628 0.77 +0.2 695,965 + buk DVU0628 0.81 +0.0 695,965 + buk DVU0628 0.81 -0.3 696,005 + buk DVU0628 0.84 -0.2 696,074 + +0.2 696,082 - -0.8 696,127 - -0.1 696,130 + -0.3 696,152 + +0.2 696,160 - -0.1 696,169 + -1.0 696,194 - -0.9 696,194 - -0.1 696,194 - +0.1 696,201 + -1.5 696,248 + -0.7 696,256 - -1.0 696,280 + -1.0 696,445 - DVU0629 0.22 +0.4 696,451 + DVU0629 0.23 +0.1 696,459 - DVU0629 0.24 +2.4 696,462 + DVU0629 0.25 +0.2 696,633 - DVU0629 0.55 +0.1 696,649 - DVU0629 0.58 -0.4 696,716 - DVU0629 0.70 -0.0 696,863 - -0.0 696,916 + DVU0630 0.16 +0.1 696,919 - DVU0630 0.18 -0.1 697,012 - DVU0630 0.71 -0.6 697,182 + -0.2 697,182 + -0.6 697,182 + +0.4 697,182 + +0.1 697,197 + +0.1 697,236 - -0.4 697,347 + +0.1 697,430 + DVU0631 0.11 +0.3 697,549 + DVU0631 0.19 +0.5 697,581 + DVU0631 0.21 -0.7 697,777 - DVU0631 0.34 -0.9 697,811 + DVU0631 0.36 +0.1 697,821 + DVU0631 0.36 +1.3
Or see this region's nucleotide sequence