Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgF and flgG are separated by 56 nucleotides flgG and DVU0514 are separated by 49 nucleotides DVU0514 and flgH are separated by 18 nucleotides flgH and flgI are separated by 9 nucleotides
DVU0512: flgF - flagellar basal-body rod protein, putative (TIGR), at 585,708 to 586,490
flgF
DVU0513: flgG - flagellar basal-body rod protein FlgG (TIGR), at 586,547 to 587,329
flgG
DVU0514: DVU0514 - FlgA family protein (TIGR), at 587,379 to 588,311
DVU0514
DVU0515: flgH - flagellar L-ring protein FlgH (TIGR), at 588,330 to 589,046
flgH
DVU0516: flgI - flagellar P-ring protein FlgI (TIGR), at 589,056 to 590,192
flgI
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1 at 586.390 kb on - strand, within flgF at 586.438 kb on + strand at 586.524 kb on + strand at 586.566 kb on - strand at 586.748 kb on - strand, within flgG at 586.765 kb on + strand, within flgG at 586.775 kb on - strand, within flgG at 586.783 kb on - strand, within flgG at 586.820 kb on + strand, within flgG at 586.872 kb on - strand, within flgG at 586.872 kb on - strand, within flgG at 586.915 kb on + strand, within flgG at 587.063 kb on + strand, within flgG at 587.068 kb on - strand, within flgG at 587.117 kb on - strand, within flgG at 587.211 kb on - strand, within flgG at 587.269 kb on + strand at 587.294 kb on - strand at 587.309 kb on + strand at 587.324 kb on + strand at 587.642 kb on + strand, within DVU0514 at 587.660 kb on + strand, within DVU0514 at 587.667 kb on + strand, within DVU0514 at 587.675 kb on - strand, within DVU0514 at 587.728 kb on - strand, within DVU0514 at 587.756 kb on + strand, within DVU0514 at 587.798 kb on - strand, within DVU0514 at 587.948 kb on + strand, within DVU0514 at 587.956 kb on - strand, within DVU0514 at 587.956 kb on - strand, within DVU0514 at 588.093 kb on + strand, within DVU0514 at 588.170 kb on - strand, within DVU0514 at 588.185 kb on - strand, within DVU0514 at 588.185 kb on - strand, within DVU0514 at 588.240 kb on - strand at 588.264 kb on - strand at 588.275 kb on - strand at 588.302 kb on + strand at 588.310 kb on - strand at 588.329 kb on - strand at 588.345 kb on - strand at 588.363 kb on + strand at 588.363 kb on + strand at 588.368 kb on + strand at 588.368 kb on + strand at 588.371 kb on - strand at 588.371 kb on - strand at 588.371 kb on - strand at 588.376 kb on - strand at 588.380 kb on + strand at 588.380 kb on + strand at 588.429 kb on + strand, within flgH at 588.444 kb on - strand, within flgH at 588.547 kb on - strand, within flgH at 588.556 kb on - strand, within flgH at 588.566 kb on + strand, within flgH at 588.580 kb on - strand, within flgH at 588.617 kb on + strand, within flgH at 588.620 kb on - strand, within flgH at 588.625 kb on - strand, within flgH at 588.625 kb on - strand, within flgH at 588.642 kb on + strand, within flgH at 588.642 kb on + strand, within flgH at 588.645 kb on - strand, within flgH at 588.682 kb on - strand, within flgH at 588.699 kb on + strand, within flgH at 588.752 kb on + strand, within flgH at 588.760 kb on - strand, within flgH at 588.841 kb on - strand, within flgH at 588.857 kb on + strand, within flgH at 588.870 kb on + strand, within flgH at 588.890 kb on - strand, within flgH at 588.892 kb on + strand, within flgH at 588.900 kb on - strand, within flgH at 588.917 kb on - strand, within flgH at 588.963 kb on + strand, within flgH at 589.031 kb on + strand at 589.121 kb on + strand at 589.195 kb on - strand, within flgI at 589.209 kb on - strand, within flgI at 589.289 kb on + strand, within flgI
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 586,390 - flgF DVU0512 0.87 +1.4 586,438 + +1.4 586,524 + -0.1 586,566 - -2.1 586,748 - flgG DVU0513 0.26 +0.2 586,765 + flgG DVU0513 0.28 -0.4 586,775 - flgG DVU0513 0.29 +0.5 586,783 - flgG DVU0513 0.30 -0.5 586,820 + flgG DVU0513 0.35 -0.1 586,872 - flgG DVU0513 0.42 -0.4 586,872 - flgG DVU0513 0.42 +0.0 586,915 + flgG DVU0513 0.47 +0.0 587,063 + flgG DVU0513 0.66 -0.1 587,068 - flgG DVU0513 0.67 +0.2 587,117 - flgG DVU0513 0.73 -0.2 587,211 - flgG DVU0513 0.85 +0.0 587,269 + +0.1 587,294 - -0.4 587,309 + +0.3 587,324 + -0.2 587,642 + DVU0514 0.28 +0.8 587,660 + DVU0514 0.30 +0.7 587,667 + DVU0514 0.31 +0.3 587,675 - DVU0514 0.32 +0.2 587,728 - DVU0514 0.37 +0.2 587,756 + DVU0514 0.40 -0.2 587,798 - DVU0514 0.45 -0.2 587,948 + DVU0514 0.61 +0.5 587,956 - DVU0514 0.62 +0.3 587,956 - DVU0514 0.62 -0.4 588,093 + DVU0514 0.77 -0.0 588,170 - DVU0514 0.85 -0.7 588,185 - DVU0514 0.86 +0.1 588,185 - DVU0514 0.86 +0.6 588,240 - +0.3 588,264 - +0.5 588,275 - +0.5 588,302 + -0.4 588,310 - -0.2 588,329 - -0.5 588,345 - -0.4 588,363 + +0.1 588,363 + +0.1 588,368 + -0.2 588,368 + +0.7 588,371 - +0.3 588,371 - +0.1 588,371 - -0.8 588,376 - +0.0 588,380 + -0.0 588,380 + -0.1 588,429 + flgH DVU0515 0.14 -1.4 588,444 - flgH DVU0515 0.16 +0.2 588,547 - flgH DVU0515 0.30 -0.0 588,556 - flgH DVU0515 0.32 -1.2 588,566 + flgH DVU0515 0.33 +0.2 588,580 - flgH DVU0515 0.35 -0.5 588,617 + flgH DVU0515 0.40 +0.9 588,620 - flgH DVU0515 0.40 -1.0 588,625 - flgH DVU0515 0.41 -0.1 588,625 - flgH DVU0515 0.41 -1.2 588,642 + flgH DVU0515 0.44 -0.5 588,642 + flgH DVU0515 0.44 +0.2 588,645 - flgH DVU0515 0.44 -1.8 588,682 - flgH DVU0515 0.49 +0.2 588,699 + flgH DVU0515 0.51 +0.7 588,752 + flgH DVU0515 0.59 -0.4 588,760 - flgH DVU0515 0.60 +0.8 588,841 - flgH DVU0515 0.71 +1.0 588,857 + flgH DVU0515 0.74 +0.2 588,870 + flgH DVU0515 0.75 +0.3 588,890 - flgH DVU0515 0.78 -0.0 588,892 + flgH DVU0515 0.78 -0.2 588,900 - flgH DVU0515 0.79 +0.2 588,917 - flgH DVU0515 0.82 +0.3 588,963 + flgH DVU0515 0.88 +0.1 589,031 + -0.5 589,121 + -1.1 589,195 - flgI DVU0516 0.12 -1.1 589,209 - flgI DVU0516 0.13 -0.4 589,289 + flgI DVU0516 0.20 +0.5
Or see this region's nucleotide sequence