Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt selB and DVU0501 are separated by 344 nucleotides DVU0501 and DVU0502 are separated by 35 nucleotides DVU0502 and pnp are separated by 356 nucleotides
DVU0500: selB - selenocysteine-specific translation elongation factor (TIGR), at 571,241 to 573,169
selB
DVU0501: DVU0501 - conserved hypothetical protein (TIGR), at 573,514 to 574,335
DVU0501
DVU0502: DVU0502 - hypothetical protein (TIGR), at 574,371 to 574,607
DVU0502
DVU0503: pnp - polyribonucleotide nucleotidyltransferase (TIGR), at 574,964 to 577,246
pnp
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.854 kb on + strand, within selB at 572.874 kb on - strand, within selB at 573.180 kb on - strand at 573.185 kb on - strand at 573.191 kb on + strand at 573.243 kb on + strand at 573.251 kb on - strand at 573.413 kb on + strand at 573.631 kb on - strand, within DVU0501 at 573.745 kb on - strand, within DVU0501 at 573.803 kb on + strand, within DVU0501 at 573.865 kb on - strand, within DVU0501 at 573.894 kb on + strand, within DVU0501 at 573.894 kb on + strand, within DVU0501 at 573.894 kb on + strand, within DVU0501 at 573.949 kb on - strand, within DVU0501 at 573.959 kb on + strand, within DVU0501 at 574.159 kb on + strand, within DVU0501 at 574.197 kb on + strand, within DVU0501 at 574.213 kb on + strand, within DVU0501 at 574.255 kb on + strand at 574.550 kb on + strand, within DVU0502 at 574.550 kb on + strand, within DVU0502 at 574.550 kb on + strand, within DVU0502 at 574.635 kb on + strand at 574.765 kb on + strand at 574.772 kb on - strand at 574.809 kb on + strand at 574.832 kb on + strand at 574.842 kb on + strand at 574.852 kb on + strand at 574.858 kb on - strand at 574.955 kb on + strand at 574.963 kb on - strand at 574.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 572,854 + selB DVU0500 0.84 -0.3 572,874 - selB DVU0500 0.85 -1.1 573,180 - -0.9 573,185 - -0.1 573,191 + -0.7 573,243 + +1.8 573,251 - -0.6 573,413 + -0.4 573,631 - DVU0501 0.14 +1.0 573,745 - DVU0501 0.28 +0.2 573,803 + DVU0501 0.35 -0.2 573,865 - DVU0501 0.43 +0.7 573,894 + DVU0501 0.46 +0.6 573,894 + DVU0501 0.46 +0.3 573,894 + DVU0501 0.46 -0.0 573,949 - DVU0501 0.53 +0.1 573,959 + DVU0501 0.54 +0.5 574,159 + DVU0501 0.78 -1.4 574,197 + DVU0501 0.83 +0.2 574,213 + DVU0501 0.85 -0.2 574,255 + +0.6 574,550 + DVU0502 0.76 -0.6 574,550 + DVU0502 0.76 +0.1 574,550 + DVU0502 0.76 -0.2 574,635 + -0.0 574,765 + -1.2 574,772 - -0.1 574,809 + -0.7 574,832 + -0.3 574,842 + +0.7 574,852 + +0.2 574,858 - -0.3 574,955 + -0.5 574,963 - +0.6 574,963 - +0.5
Or see this region's nucleotide sequence