Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0475

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0474 and DVU0475 are separated by 105 nucleotidesDVU0475 and icd are separated by 329 nucleotides DVU0474: DVU0474 - ISDvu4, transposase (TIGR), at 540,442 to 541,491 DVU0474 DVU0475: DVU0475 - membrane protein, putative, truncation (TIGR), at 541,597 to 542,037 DVU0475 DVU0477: icd - isocitrate dehydrogenase, NADP-dependent (TIGR), at 542,367 to 543,509 icd Position (kb) 541 542 543Strain fitness (log2 ratio) -1 0 1at 541.600 kb on + strandat 541.751 kb on - strand, within DVU0475at 541.847 kb on + strand, within DVU0475at 541.855 kb on - strand, within DVU0475at 541.964 kb on + strand, within DVU0475at 542.034 kb on - strandat 542.151 kb on - strandat 542.223 kb on + strandat 542.332 kb on + strandat 542.340 kb on - strandat 542.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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541,600 + -0.0
541,751 - DVU0475 0.35 -0.6
541,847 + DVU0475 0.57 +0.6
541,855 - DVU0475 0.59 +0.6
541,964 + DVU0475 0.83 -0.3
542,034 - -0.9
542,151 - +1.2
542,223 + -0.3
542,332 + -0.2
542,340 - -0.6
542,356 + -0.5

Or see this region's nucleotide sequence