Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mnhA and DVU0436 are separated by 310 nucleotides DVU0436 and DVU0437 are separated by 154 nucleotides
DVU0434: mnhA - Ech hydrogenase, subunit EchA, putative (TIGR), at 487,639 to 489,585
mnhA
DVU0436: DVU0436 - transcriptional regulator, TetR family (TIGR), at 489,896 to 490,600
DVU0436
DVU0437: DVU0437 - efflux transporter, RND family, MFP subunit (TIGR), at 490,755 to 492,215
DVU0437
Position (kb) 489
490
491 Strain fitness (log2 ratio) -1
0
1
2 at 488.929 kb on - strand, within mnhA at 488.955 kb on - strand, within mnhA at 488.980 kb on + strand, within mnhA at 489.081 kb on - strand, within mnhA at 489.105 kb on - strand, within mnhA at 489.207 kb on + strand, within mnhA at 489.299 kb on + strand, within mnhA at 489.307 kb on - strand, within mnhA at 489.376 kb on + strand, within mnhA at 489.385 kb on - strand, within mnhA at 489.431 kb on - strand at 489.437 kb on + strand at 489.455 kb on + strand at 489.455 kb on + strand at 489.657 kb on + strand at 489.669 kb on + strand at 489.884 kb on + strand at 489.891 kb on + strand at 489.930 kb on + strand at 489.935 kb on + strand at 489.943 kb on - strand at 489.943 kb on - strand at 490.119 kb on + strand, within DVU0436 at 490.418 kb on - strand, within DVU0436 at 490.550 kb on + strand at 490.703 kb on + strand at 490.715 kb on + strand at 490.723 kb on - strand at 490.783 kb on + strand at 490.793 kb on - strand at 490.853 kb on - strand at 490.857 kb on + strand at 490.857 kb on + strand at 490.896 kb on - strand at 490.952 kb on + strand, within DVU0437 at 490.952 kb on + strand, within DVU0437 at 491.033 kb on + strand, within DVU0437 at 491.033 kb on + strand, within DVU0437 at 491.033 kb on + strand, within DVU0437 at 491.257 kb on - strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.350 kb on + strand, within DVU0437 at 491.358 kb on - strand, within DVU0437 at 491.361 kb on + strand, within DVU0437 at 491.369 kb on - strand, within DVU0437 at 491.379 kb on - strand, within DVU0437 at 491.382 kb on - strand, within DVU0437 at 491.384 kb on - strand, within DVU0437 at 491.423 kb on + strand, within DVU0437 at 491.470 kb on - strand, within DVU0437 at 491.548 kb on - strand, within DVU0437
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 488,929 - mnhA DVU0434 0.66 +0.3 488,955 - mnhA DVU0434 0.68 +0.2 488,980 + mnhA DVU0434 0.69 -0.1 489,081 - mnhA DVU0434 0.74 -0.0 489,105 - mnhA DVU0434 0.75 -0.9 489,207 + mnhA DVU0434 0.81 +0.1 489,299 + mnhA DVU0434 0.85 -0.2 489,307 - mnhA DVU0434 0.86 -0.7 489,376 + mnhA DVU0434 0.89 -0.4 489,385 - mnhA DVU0434 0.90 +0.1 489,431 - -0.4 489,437 + +0.4 489,455 + -0.6 489,455 + -0.3 489,657 + -0.2 489,669 + -0.3 489,884 + -0.2 489,891 + -1.7 489,930 + -0.8 489,935 + -0.7 489,943 - -1.1 489,943 - -1.1 490,119 + DVU0436 0.32 +1.1 490,418 - DVU0436 0.74 -0.1 490,550 + +1.1 490,703 + +0.3 490,715 + -0.1 490,723 - +0.1 490,783 + +0.5 490,793 - +0.3 490,853 - -0.1 490,857 + -0.3 490,857 + +0.2 490,896 - +1.2 490,952 + DVU0437 0.13 -0.2 490,952 + DVU0437 0.13 +0.2 491,033 + DVU0437 0.19 +0.5 491,033 + DVU0437 0.19 -1.7 491,033 + DVU0437 0.19 -1.0 491,257 - DVU0437 0.34 -0.8 491,350 + DVU0437 0.41 +2.3 491,350 + DVU0437 0.41 +0.4 491,350 + DVU0437 0.41 +1.5 491,358 - DVU0437 0.41 -0.1 491,361 + DVU0437 0.41 +0.4 491,369 - DVU0437 0.42 -0.6 491,379 - DVU0437 0.43 +0.4 491,382 - DVU0437 0.43 +0.3 491,384 - DVU0437 0.43 +1.0 491,423 + DVU0437 0.46 -0.7 491,470 - DVU0437 0.49 -0.5 491,548 - DVU0437 0.54 -0.0
Or see this region's nucleotide sequence