Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0409 and DVU0410 are separated by 5 nucleotides DVU0410 and DVU0411 are separated by 161 nucleotides DVU0411 and DVU0412 are separated by 16 nucleotides DVU0412 and trk1 are separated by 57 nucleotides
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353
DVU0412
DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748
trk1
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -1
0
1
2 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410 at 459.658 kb on + strand, within DVU0410 at 459.665 kb on - strand, within DVU0410 at 459.685 kb on - strand, within DVU0410 at 459.688 kb on + strand, within DVU0410 at 459.727 kb on - strand, within DVU0410 at 459.737 kb on + strand, within DVU0410 at 459.934 kb on + strand at 460.029 kb on - strand at 460.118 kb on - strand at 460.133 kb on + strand at 460.136 kb on - strand at 460.154 kb on - strand at 460.176 kb on - strand, within DVU0411 at 460.255 kb on - strand, within DVU0411 at 460.294 kb on - strand, within DVU0411 at 460.299 kb on + strand, within DVU0411 at 460.304 kb on + strand, within DVU0411 at 460.316 kb on + strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.321 kb on + strand, within DVU0411 at 460.324 kb on - strand, within DVU0411 at 460.355 kb on - strand, within DVU0411 at 460.423 kb on - strand, within DVU0411 at 460.438 kb on - strand, within DVU0411 at 460.561 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.574 kb on - strand, within DVU0411 at 460.589 kb on - strand, within DVU0411 at 460.701 kb on + strand, within DVU0411 at 460.709 kb on - strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.769 kb on + strand, within DVU0411 at 460.876 kb on - strand, within DVU0411 at 460.914 kb on + strand, within DVU0411 at 460.922 kb on - strand, within DVU0411 at 460.924 kb on - strand, within DVU0411 at 460.984 kb on + strand, within DVU0411 at 461.049 kb on - strand, within DVU0411 at 461.132 kb on + strand, within DVU0411 at 461.140 kb on - strand, within DVU0411 at 461.165 kb on + strand, within DVU0411 at 461.361 kb on - strand, within DVU0411 at 461.480 kb on - strand, within DVU0411 at 461.504 kb on + strand at 461.512 kb on - strand at 461.521 kb on + strand at 461.539 kb on - strand at 461.634 kb on + strand at 461.816 kb on + strand, within DVU0412 at 461.824 kb on - strand, within DVU0412 at 461.903 kb on + strand, within DVU0412 at 461.965 kb on - strand, within DVU0412 at 462.012 kb on - strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.046 kb on + strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.054 kb on - strand, within DVU0412 at 462.181 kb on - strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.239 kb on + strand, within DVU0412 at 462.274 kb on + strand, within DVU0412 at 462.329 kb on - strand at 462.360 kb on + strand at 462.368 kb on - strand at 462.591 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.599 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.609 kb on - strand, within trk1 at 462.653 kb on - strand, within trk1
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 459,177 + DVU0409 0.86 -0.4 459,177 + DVU0409 0.86 -0.7 459,202 - +0.0 459,448 + DVU0410 0.36 +0.3 459,448 + DVU0410 0.36 -0.0 459,482 - DVU0410 0.41 -0.1 459,500 + DVU0410 0.44 +0.7 459,500 + DVU0410 0.44 +0.1 459,500 + DVU0410 0.44 -0.1 459,562 + DVU0410 0.55 -0.1 459,577 + DVU0410 0.57 -0.6 459,580 - DVU0410 0.58 +0.1 459,585 - DVU0410 0.58 +0.3 459,658 + DVU0410 0.70 +1.5 459,665 - DVU0410 0.72 +1.9 459,685 - DVU0410 0.75 +0.2 459,688 + DVU0410 0.75 -0.3 459,727 - DVU0410 0.82 +0.4 459,737 + DVU0410 0.83 -0.2 459,934 + +0.3 460,029 - +0.5 460,118 - -1.0 460,133 + -0.1 460,136 - -0.3 460,154 - +1.4 460,176 - DVU0411 0.11 +0.2 460,255 - DVU0411 0.15 -0.8 460,294 - DVU0411 0.18 +0.7 460,299 + DVU0411 0.18 +0.2 460,304 + DVU0411 0.18 +0.1 460,316 + DVU0411 0.19 +0.2 460,319 - DVU0411 0.19 -0.0 460,319 - DVU0411 0.19 -0.4 460,321 + DVU0411 0.19 -0.7 460,324 - DVU0411 0.19 +2.1 460,355 - DVU0411 0.21 +0.2 460,423 - DVU0411 0.25 +0.1 460,438 - DVU0411 0.26 -0.2 460,561 + DVU0411 0.34 +0.6 460,566 + DVU0411 0.34 -0.3 460,566 + DVU0411 0.34 +0.7 460,574 - DVU0411 0.34 +1.2 460,589 - DVU0411 0.35 +1.0 460,701 + DVU0411 0.42 +0.2 460,709 - DVU0411 0.42 -0.2 460,764 + DVU0411 0.46 +0.9 460,764 + DVU0411 0.46 +0.1 460,769 + DVU0411 0.46 +1.3 460,876 - DVU0411 0.52 +0.7 460,914 + DVU0411 0.55 -0.5 460,922 - DVU0411 0.55 +0.9 460,924 - DVU0411 0.55 +0.3 460,984 + DVU0411 0.59 -0.7 461,049 - DVU0411 0.63 -0.3 461,132 + DVU0411 0.68 -0.0 461,140 - DVU0411 0.68 -0.2 461,165 + DVU0411 0.70 -0.2 461,361 - DVU0411 0.81 -0.3 461,480 - DVU0411 0.89 +0.2 461,504 + -0.7 461,512 - +0.1 461,521 + -0.3 461,539 - +0.2 461,634 + +0.0 461,816 + DVU0412 0.19 +0.8 461,824 - DVU0412 0.20 +0.1 461,903 + DVU0412 0.32 +0.4 461,965 - DVU0412 0.42 +0.4 462,012 - DVU0412 0.49 -1.3 462,046 + DVU0412 0.54 -0.4 462,046 + DVU0412 0.54 -0.8 462,054 - DVU0412 0.55 -0.8 462,054 - DVU0412 0.55 -0.2 462,054 - DVU0412 0.55 +0.4 462,054 - DVU0412 0.55 +0.5 462,181 - DVU0412 0.74 -0.8 462,239 + DVU0412 0.83 -0.9 462,239 + DVU0412 0.83 +0.1 462,274 + DVU0412 0.88 +0.6 462,329 - -0.0 462,360 + -0.1 462,368 - -0.3 462,591 - trk1 DVU0413 0.13 -0.8 462,599 - trk1 DVU0413 0.14 +0.1 462,599 - trk1 DVU0413 0.14 -0.6 462,599 - trk1 DVU0413 0.14 +2.1 462,609 - trk1 DVU0413 0.15 -0.3 462,609 - trk1 DVU0413 0.15 +1.2 462,653 - trk1 DVU0413 0.18 +0.7
Or see this region's nucleotide sequence