Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0309 and fliI are separated by 135 nucleotides fliI and DVU0311 overlap by 4 nucleotides DVU0311 and fliG overlap by 14 nucleotides
DVU0309: DVU0309 - transcriptional regulator, LysR family (TIGR), at 353,856 to 354,776
DVU0309
DVU0310: fliI - flagellum-specific ATP synthase FliI (TIGR), at 354,912 to 356,225
fliI
DVU0311: DVU0311 - flagellar assembly protein FliH, putative (TIGR), at 356,222 to 356,974
DVU0311
DVU0312: fliG - flagellar motor switch protein FliG (TIGR), at 356,961 to 357,977
fliG
Position (kb) 354
355
356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 353.952 kb on + strand, within DVU0309 at 354.021 kb on + strand, within DVU0309 at 354.021 kb on + strand, within DVU0309 at 354.061 kb on - strand, within DVU0309 at 354.111 kb on - strand, within DVU0309 at 354.116 kb on + strand, within DVU0309 at 354.170 kb on - strand, within DVU0309 at 354.177 kb on - strand, within DVU0309 at 354.219 kb on - strand, within DVU0309 at 354.259 kb on + strand, within DVU0309 at 354.344 kb on + strand, within DVU0309 at 354.398 kb on + strand, within DVU0309 at 354.499 kb on - strand, within DVU0309 at 354.520 kb on + strand, within DVU0309 at 354.538 kb on - strand, within DVU0309 at 354.539 kb on + strand, within DVU0309 at 354.583 kb on + strand, within DVU0309 at 354.591 kb on - strand, within DVU0309 at 354.596 kb on - strand, within DVU0309 at 354.598 kb on + strand, within DVU0309 at 354.624 kb on - strand, within DVU0309 at 354.663 kb on - strand, within DVU0309 at 354.683 kb on - strand, within DVU0309 at 354.701 kb on - strand at 354.701 kb on - strand at 354.712 kb on - strand at 354.796 kb on + strand at 354.804 kb on - strand at 354.938 kb on + strand at 354.940 kb on - strand at 354.978 kb on - strand at 355.167 kb on - strand, within fliI at 355.219 kb on - strand, within fliI at 355.290 kb on + strand, within fliI at 355.290 kb on + strand, within fliI at 355.300 kb on + strand, within fliI at 355.330 kb on - strand, within fliI at 355.335 kb on - strand, within fliI at 355.381 kb on + strand, within fliI at 355.381 kb on + strand, within fliI at 355.408 kb on + strand, within fliI at 355.477 kb on + strand, within fliI at 355.485 kb on - strand, within fliI at 355.628 kb on + strand, within fliI at 355.668 kb on - strand, within fliI at 355.668 kb on - strand, within fliI at 355.703 kb on + strand, within fliI at 355.703 kb on + strand, within fliI at 355.718 kb on + strand, within fliI at 355.774 kb on - strand, within fliI at 355.790 kb on - strand, within fliI at 355.851 kb on - strand, within fliI at 355.920 kb on + strand, within fliI at 355.920 kb on + strand, within fliI at 356.000 kb on + strand, within fliI at 356.008 kb on - strand, within fliI at 356.008 kb on - strand, within fliI at 356.008 kb on - strand, within fliI at 356.012 kb on - strand, within fliI at 356.013 kb on - strand, within fliI at 356.084 kb on + strand, within fliI at 356.085 kb on + strand, within fliI at 356.145 kb on - strand at 356.147 kb on - strand at 356.154 kb on - strand at 356.204 kb on - strand at 356.249 kb on - strand at 356.263 kb on - strand at 356.277 kb on - strand at 356.278 kb on - strand at 356.426 kb on + strand, within DVU0311 at 356.495 kb on + strand, within DVU0311 at 356.516 kb on + strand, within DVU0311 at 356.646 kb on + strand, within DVU0311 at 356.741 kb on - strand, within DVU0311 at 356.797 kb on + strand, within DVU0311 at 356.883 kb on + strand, within DVU0311 at 356.898 kb on - strand, within DVU0311 at 356.926 kb on - strand at 356.927 kb on + strand at 356.936 kb on - strand at 357.003 kb on + strand at 357.003 kb on + strand at 357.045 kb on - strand at 357.047 kb on - strand at 357.060 kb on - strand at 357.069 kb on - strand, within fliG at 357.181 kb on - strand, within fliG at 357.202 kb on + strand, within fliG at 357.202 kb on + strand, within fliG at 357.210 kb on - strand, within fliG
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 353,952 + DVU0309 0.10 -0.5 354,021 + DVU0309 0.18 -0.2 354,021 + DVU0309 0.18 -0.1 354,061 - DVU0309 0.22 +0.2 354,111 - DVU0309 0.28 -0.3 354,116 + DVU0309 0.28 +0.0 354,170 - DVU0309 0.34 +0.4 354,177 - DVU0309 0.35 +0.4 354,219 - DVU0309 0.39 -2.4 354,259 + DVU0309 0.44 +0.1 354,344 + DVU0309 0.53 -0.3 354,398 + DVU0309 0.59 -0.3 354,499 - DVU0309 0.70 -0.5 354,520 + DVU0309 0.72 -2.6 354,538 - DVU0309 0.74 +0.2 354,539 + DVU0309 0.74 +0.0 354,583 + DVU0309 0.79 -1.1 354,591 - DVU0309 0.80 +0.4 354,596 - DVU0309 0.80 -0.2 354,598 + DVU0309 0.81 -0.5 354,624 - DVU0309 0.83 -0.0 354,663 - DVU0309 0.88 -0.0 354,683 - DVU0309 0.90 -0.3 354,701 - +0.6 354,701 - +0.4 354,712 - -0.3 354,796 + -0.0 354,804 - +0.5 354,938 + +0.8 354,940 - +0.3 354,978 - +0.2 355,167 - fliI DVU0310 0.19 +0.3 355,219 - fliI DVU0310 0.23 +0.5 355,290 + fliI DVU0310 0.29 +0.1 355,290 + fliI DVU0310 0.29 +0.6 355,300 + fliI DVU0310 0.30 +0.0 355,330 - fliI DVU0310 0.32 -0.1 355,335 - fliI DVU0310 0.32 +0.2 355,381 + fliI DVU0310 0.36 +0.2 355,381 + fliI DVU0310 0.36 +0.2 355,408 + fliI DVU0310 0.38 +0.2 355,477 + fliI DVU0310 0.43 +1.4 355,485 - fliI DVU0310 0.44 -0.5 355,628 + fliI DVU0310 0.54 -0.2 355,668 - fliI DVU0310 0.58 -0.5 355,668 - fliI DVU0310 0.58 +0.8 355,703 + fliI DVU0310 0.60 +0.1 355,703 + fliI DVU0310 0.60 -0.4 355,718 + fliI DVU0310 0.61 -1.1 355,774 - fliI DVU0310 0.66 -0.7 355,790 - fliI DVU0310 0.67 +0.3 355,851 - fliI DVU0310 0.71 +0.3 355,920 + fliI DVU0310 0.77 -0.1 355,920 + fliI DVU0310 0.77 +0.2 356,000 + fliI DVU0310 0.83 +0.4 356,008 - fliI DVU0310 0.83 +0.5 356,008 - fliI DVU0310 0.83 +0.7 356,008 - fliI DVU0310 0.83 -0.6 356,012 - fliI DVU0310 0.84 +0.5 356,013 - fliI DVU0310 0.84 +0.3 356,084 + fliI DVU0310 0.89 +0.1 356,085 + fliI DVU0310 0.89 +0.3 356,145 - +0.8 356,147 - +0.9 356,154 - -0.2 356,204 - +0.2 356,249 - +0.5 356,263 - -0.5 356,277 - -0.1 356,278 - -0.2 356,426 + DVU0311 0.27 +0.0 356,495 + DVU0311 0.36 +0.4 356,516 + DVU0311 0.39 +0.3 356,646 + DVU0311 0.56 +0.0 356,741 - DVU0311 0.69 +0.2 356,797 + DVU0311 0.76 +0.4 356,883 + DVU0311 0.88 -0.6 356,898 - DVU0311 0.90 +0.7 356,926 - -0.7 356,927 + -0.6 356,936 - +0.3 357,003 + +0.4 357,003 + +0.2 357,045 - +0.3 357,047 - -0.1 357,060 - +1.0 357,069 - fliG DVU0312 0.11 +0.1 357,181 - fliG DVU0312 0.22 +0.3 357,202 + fliG DVU0312 0.24 +0.3 357,202 + fliG DVU0312 0.24 +0.2 357,210 - fliG DVU0312 0.24 -0.9
Or see this region's nucleotide sequence