Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0298

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0297 and DVU0298 are separated by 610 nucleotidesDVU0298 and DORF4420 are separated by 72 nucleotidesDORF4420 and DVU0299 are separated by 178 nucleotides DVU0297: DVU0297 - hypothetical protein (TIGR), at 343,642 to 343,836 DVU0297 DVU0298: DVU0298 - hypothetical protein (TIGR), at 344,447 to 345,232 DVU0298 DORF4420: DORF4420 - no description, at 345,305 to 345,463 DORF4420 DVU0299: DVU0299 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 345,642 to 347,687 DVU0299 Position (kb) 344 345 346Strain fitness (log2 ratio) -1 0 1at 343.464 kb on - strandat 343.519 kb on - strandat 343.544 kb on + strandat 343.597 kb on + strandat 343.644 kb on + strandat 343.695 kb on + strand, within DVU0297at 343.698 kb on - strand, within DVU0297at 343.700 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.713 kb on + strand, within DVU0297at 343.720 kb on + strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.721 kb on - strand, within DVU0297at 343.728 kb on - strand, within DVU0297at 343.773 kb on + strand, within DVU0297at 343.783 kb on + strand, within DVU0297at 343.806 kb on - strand, within DVU0297at 343.851 kb on - strandat 343.872 kb on + strandat 343.906 kb on - strandat 343.949 kb on - strandat 343.975 kb on + strandat 343.983 kb on - strandat 344.008 kb on + strandat 344.011 kb on - strandat 344.094 kb on - strandat 344.120 kb on - strandat 344.147 kb on - strandat 344.166 kb on + strandat 344.258 kb on + strandat 344.328 kb on - strandat 344.330 kb on - strandat 344.350 kb on - strandat 344.350 kb on - strandat 344.360 kb on - strandat 344.385 kb on + strandat 344.424 kb on - strandat 344.430 kb on + strandat 344.477 kb on - strandat 344.501 kb on + strandat 344.591 kb on + strand, within DVU0298at 344.613 kb on + strand, within DVU0298at 344.623 kb on + strand, within DVU0298at 344.631 kb on - strand, within DVU0298at 344.631 kb on - strand, within DVU0298at 344.777 kb on + strand, within DVU0298at 344.829 kb on - strand, within DVU0298at 344.989 kb on - strand, within DVU0298at 345.005 kb on + strand, within DVU0298at 345.058 kb on - strand, within DVU0298at 345.357 kb on + strand, within DORF4420at 345.362 kb on + strand, within DORF4420at 345.365 kb on - strand, within DORF4420at 345.372 kb on - strand, within DORF4420at 345.389 kb on - strand, within DORF4420at 345.402 kb on + strand, within DORF4420at 345.435 kb on + strand, within DORF4420at 345.435 kb on + strand, within DORF4420at 345.558 kb on + strandat 345.622 kb on - strandat 345.918 kb on - strand, within DVU0299at 345.924 kb on - strand, within DVU0299at 345.945 kb on - strand, within DVU0299at 345.960 kb on - strand, within DVU0299at 345.983 kb on + strand, within DVU0299at 345.995 kb on + strand, within DVU0299at 346.038 kb on - strand, within DVU0299at 346.062 kb on + strand, within DVU0299at 346.125 kb on - strand, within DVU0299at 346.178 kb on + strand, within DVU0299

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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343,464 - +1.0
343,519 - -1.0
343,544 + -0.6
343,597 + +0.3
343,644 + +0.4
343,695 + DVU0297 0.27 -0.4
343,698 - DVU0297 0.29 -0.1
343,700 + DVU0297 0.30 -0.0
343,713 + DVU0297 0.36 -1.3
343,713 + DVU0297 0.36 +0.5
343,713 + DVU0297 0.36 -0.0
343,713 + DVU0297 0.36 -0.3
343,713 + DVU0297 0.36 -0.6
343,713 + DVU0297 0.36 -0.1
343,713 + DVU0297 0.36 -0.9
343,720 + DVU0297 0.40 +0.2
343,721 - DVU0297 0.41 -0.9
343,721 - DVU0297 0.41 +0.5
343,721 - DVU0297 0.41 +1.1
343,721 - DVU0297 0.41 -0.0
343,728 - DVU0297 0.44 +0.6
343,773 + DVU0297 0.67 +0.2
343,783 + DVU0297 0.72 -0.1
343,806 - DVU0297 0.84 -0.5
343,851 - -0.4
343,872 + -1.2
343,906 - -0.7
343,949 - -0.6
343,975 + +0.5
343,983 - -0.5
344,008 + -0.2
344,011 - -0.5
344,094 - -0.2
344,120 - +0.2
344,147 - +0.3
344,166 + +0.1
344,258 + -0.6
344,328 - +0.0
344,330 - -0.7
344,350 - -0.3
344,350 - -0.3
344,360 - +0.5
344,385 + +0.3
344,424 - +0.0
344,430 + -0.4
344,477 - +0.2
344,501 + +0.2
344,591 + DVU0298 0.18 +0.7
344,613 + DVU0298 0.21 +0.4
344,623 + DVU0298 0.22 +1.1
344,631 - DVU0298 0.23 -0.4
344,631 - DVU0298 0.23 -0.7
344,777 + DVU0298 0.42 +1.0
344,829 - DVU0298 0.49 +0.1
344,989 - DVU0298 0.69 -0.8
345,005 + DVU0298 0.71 -0.0
345,058 - DVU0298 0.78 +1.3
345,357 + DORF4420 0.33 +0.1
345,362 + DORF4420 0.36 -0.1
345,365 - DORF4420 0.38 -0.8
345,372 - DORF4420 0.42 +0.1
345,389 - DORF4420 0.53 +0.3
345,402 + DORF4420 0.61 +0.6
345,435 + DORF4420 0.82 -0.2
345,435 + DORF4420 0.82 -1.3
345,558 + +0.1
345,622 - +0.0
345,918 - DVU0299 0.13 -0.2
345,924 - DVU0299 0.14 -0.4
345,945 - DVU0299 0.15 -0.3
345,960 - DVU0299 0.16 -0.5
345,983 + DVU0299 0.17 +0.2
345,995 + DVU0299 0.17 +0.2
346,038 - DVU0299 0.19 -0.0
346,062 + DVU0299 0.21 +0.5
346,125 - DVU0299 0.24 -0.2
346,178 + DVU0299 0.26 +0.1

Or see this region's nucleotide sequence