Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrf and DVU0257 are separated by 839 nucleotides DVU0257 and DVU0258 are separated by 160 nucleotides
Dv5SB: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 299,866 to 299,982
rrf
DVU0257: DVU0257 - acetyltransferase, GNAT family (TIGR), at 300,822 to 301,286
DVU0257
DVU0258: DVU0258 - sensory box histidine kinase/response regulator (TIGR), at 301,447 to 303,420
DVU0258
Position (kb) 300
301
302 Strain fitness (log2 ratio) -1
0
1 at 300.459 kb on + strand at 300.513 kb on + strand at 300.544 kb on + strand at 300.552 kb on - strand at 300.566 kb on + strand at 300.574 kb on - strand at 300.655 kb on - strand at 300.655 kb on - strand at 300.718 kb on + strand at 300.836 kb on + strand at 300.959 kb on + strand, within DVU0257 at 301.113 kb on + strand, within DVU0257 at 301.316 kb on + strand at 301.316 kb on + strand at 301.361 kb on + strand at 301.377 kb on + strand at 301.499 kb on - strand at 301.508 kb on + strand at 301.690 kb on + strand, within DVU0258 at 301.757 kb on - strand, within DVU0258 at 301.757 kb on - strand, within DVU0258 at 301.775 kb on - strand, within DVU0258 at 301.826 kb on - strand, within DVU0258 at 301.840 kb on - strand, within DVU0258 at 301.840 kb on - strand, within DVU0258 at 301.853 kb on + strand, within DVU0258 at 301.983 kb on - strand, within DVU0258 at 302.060 kb on - strand, within DVU0258 at 302.142 kb on - strand, within DVU0258 at 302.157 kb on - strand, within DVU0258 at 302.170 kb on - strand, within DVU0258 at 302.279 kb on + strand, within DVU0258 at 302.279 kb on - strand, within DVU0258
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 300,459 + -0.6 300,513 + +0.1 300,544 + -0.2 300,552 - +0.1 300,566 + +0.0 300,574 - -0.2 300,655 - +0.4 300,655 - -0.9 300,718 + -1.3 300,836 + -0.9 300,959 + DVU0257 0.29 +0.6 301,113 + DVU0257 0.63 +0.1 301,316 + -0.0 301,316 + -0.4 301,361 + -0.4 301,377 + -0.9 301,499 - -0.3 301,508 + -0.9 301,690 + DVU0258 0.12 -0.1 301,757 - DVU0258 0.16 +0.1 301,757 - DVU0258 0.16 +0.2 301,775 - DVU0258 0.17 +0.9 301,826 - DVU0258 0.19 -0.2 301,840 - DVU0258 0.20 -0.3 301,840 - DVU0258 0.20 +0.3 301,853 + DVU0258 0.21 +0.2 301,983 - DVU0258 0.27 -0.7 302,060 - DVU0258 0.31 -0.2 302,142 - DVU0258 0.35 -0.4 302,157 - DVU0258 0.36 -1.7 302,170 - DVU0258 0.37 +0.2 302,279 + DVU0258 0.42 +0.4 302,279 - DVU0258 0.42 +0.2
Or see this region's nucleotide sequence