Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0062 and DVU0063 are separated by 29 nucleotides DVU0063 and DVU0064 are separated by 88 nucleotides
DVU0062: DVU0062 - RND efflux system, outer membrane protein, NodT family (TIGR), at 73,877 to 75,391
DVU0062
DVU0063: DVU0063 - transcriptional regulator, MarR family (TIGR), at 75,421 to 75,861
DVU0063
DVU0064: DVU0064 - hypothetical protein (TIGR), at 75,950 to 76,858
DVU0064
Position (kb) 75
76 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.452 kb on - strand, within DVU0062 at 74.486 kb on - strand, within DVU0062 at 74.519 kb on - strand, within DVU0062 at 74.540 kb on + strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.747 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.866 kb on - strand, within DVU0062 at 74.898 kb on - strand, within DVU0062 at 74.994 kb on + strand, within DVU0062 at 75.365 kb on - strand at 75.365 kb on - strand at 75.385 kb on + strand at 75.544 kb on - strand, within DVU0063 at 75.594 kb on + strand, within DVU0063 at 75.602 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.711 kb on + strand, within DVU0063 at 75.811 kb on + strand, within DVU0063 at 75.827 kb on + strand at 75.833 kb on - strand at 75.861 kb on + strand at 75.939 kb on - strand at 75.953 kb on - strand at 76.051 kb on + strand, within DVU0064 at 76.210 kb on + strand, within DVU0064 at 76.269 kb on - strand, within DVU0064 at 76.271 kb on + strand, within DVU0064 at 76.313 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.366 kb on + strand, within DVU0064 at 76.381 kb on + strand, within DVU0064 at 76.388 kb on + strand, within DVU0064 at 76.468 kb on + strand, within DVU0064 at 76.474 kb on + strand, within DVU0064 at 76.660 kb on + strand, within DVU0064 at 76.675 kb on - strand, within DVU0064 at 76.684 kb on + strand, within DVU0064 at 76.684 kb on + strand, within DVU0064 at 76.699 kb on - strand, within DVU0064 at 76.712 kb on - strand, within DVU0064 at 76.747 kb on + strand, within DVU0064
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 74,452 - DVU0062 0.38 +2.2 74,486 - DVU0062 0.40 -1.6 74,519 - DVU0062 0.42 -1.6 74,540 + DVU0062 0.44 -0.1 74,561 - DVU0062 0.45 +0.2 74,561 - DVU0062 0.45 -0.2 74,747 - DVU0062 0.57 -2.0 74,861 - DVU0062 0.65 -0.5 74,861 - DVU0062 0.65 -0.2 74,866 - DVU0062 0.65 -0.9 74,898 - DVU0062 0.67 -0.7 74,994 + DVU0062 0.74 -0.4 75,365 - -1.7 75,365 - -0.9 75,385 + +0.2 75,544 - DVU0063 0.28 +1.2 75,594 + DVU0063 0.39 +0.3 75,602 - DVU0063 0.41 +0.4 75,604 - DVU0063 0.41 -0.1 75,604 - DVU0063 0.41 +1.0 75,711 + DVU0063 0.66 -0.3 75,811 + DVU0063 0.88 -1.2 75,827 + +0.6 75,833 - +0.9 75,861 + +1.8 75,939 - -0.1 75,953 - -0.5 76,051 + DVU0064 0.11 -0.1 76,210 + DVU0064 0.29 +1.0 76,269 - DVU0064 0.35 -0.3 76,271 + DVU0064 0.35 -0.5 76,313 + DVU0064 0.40 -0.2 76,320 + DVU0064 0.41 +0.2 76,320 + DVU0064 0.41 +0.5 76,366 + DVU0064 0.46 -0.7 76,381 + DVU0064 0.47 -0.7 76,388 + DVU0064 0.48 -0.2 76,468 + DVU0064 0.57 +0.3 76,474 + DVU0064 0.58 +1.4 76,660 + DVU0064 0.78 -0.4 76,675 - DVU0064 0.80 -0.9 76,684 + DVU0064 0.81 +0.1 76,684 + DVU0064 0.81 -0.4 76,699 - DVU0064 0.82 -0.3 76,712 - DVU0064 0.84 -0.3 76,747 + DVU0064 0.88 -0.2
Or see this region's nucleotide sequence