Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0033 and DVU0034 are separated by 147 nucleotides DVU0034 and DVU0035 are separated by 388 nucleotides DVU0035 and DVU0036 are separated by 413 nucleotides
DVU0033: DVU0033 - isochorismatase family protein (TIGR), at 39,764 to 40,378
DVU0033
DVU0034: DVU0034 - DSBA-like thioredoxin domain protein (TIGR), at 40,526 to 41,311
DVU0034
DVU0035: DVU0035 - hypothetical protein (TIGR), at 41,700 to 41,873
DVU0035
DVU0036: DVU0036 - hypothetical protein (TIGR), at 42,287 to 42,742
DVU0036
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 39.538 kb on - strand at 39.653 kb on + strand at 39.658 kb on + strand at 39.658 kb on + strand at 39.679 kb on + strand at 39.788 kb on - strand at 39.813 kb on + strand at 39.838 kb on - strand, within DVU0033 at 39.912 kb on - strand, within DVU0033 at 40.133 kb on + strand, within DVU0033 at 40.141 kb on - strand, within DVU0033 at 40.294 kb on + strand, within DVU0033 at 40.295 kb on + strand, within DVU0033 at 40.295 kb on + strand, within DVU0033 at 40.302 kb on - strand, within DVU0033 at 40.319 kb on + strand at 40.319 kb on + strand at 40.326 kb on + strand at 40.380 kb on - strand at 40.410 kb on + strand at 40.418 kb on - strand at 40.426 kb on - strand at 40.492 kb on + strand at 40.536 kb on - strand at 40.573 kb on + strand at 40.675 kb on + strand, within DVU0034 at 40.685 kb on + strand, within DVU0034 at 40.685 kb on + strand, within DVU0034 at 40.693 kb on - strand, within DVU0034 at 40.744 kb on + strand, within DVU0034 at 40.744 kb on + strand, within DVU0034 at 40.841 kb on + strand, within DVU0034 at 40.946 kb on - strand, within DVU0034 at 41.002 kb on - strand, within DVU0034 at 41.004 kb on + strand, within DVU0034 at 41.059 kb on + strand, within DVU0034 at 41.073 kb on - strand, within DVU0034 at 41.167 kb on + strand, within DVU0034 at 41.207 kb on + strand, within DVU0034 at 41.249 kb on - strand at 41.327 kb on - strand at 41.336 kb on + strand at 41.356 kb on + strand at 41.361 kb on - strand at 41.378 kb on - strand at 41.402 kb on + strand at 41.447 kb on - strand at 41.454 kb on + strand at 41.496 kb on - strand at 41.526 kb on - strand at 41.535 kb on + strand at 41.542 kb on + strand at 41.549 kb on + strand at 41.550 kb on - strand at 41.558 kb on + strand at 41.583 kb on - strand at 41.598 kb on - strand at 41.613 kb on - strand at 41.613 kb on - strand at 41.818 kb on + strand, within DVU0035 at 41.836 kb on - strand, within DVU0035 at 41.860 kb on + strand at 41.879 kb on + strand at 41.881 kb on + strand at 42.001 kb on - strand at 42.002 kb on + strand at 42.011 kb on - strand at 42.028 kb on - strand at 42.083 kb on + strand at 42.083 kb on + strand at 42.091 kb on - strand at 42.091 kb on - strand at 42.091 kb on - strand at 42.126 kb on - strand at 42.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 39,538 - -0.1 39,653 + +0.6 39,658 + -0.4 39,658 + -1.4 39,679 + -0.2 39,788 - -1.3 39,813 + +2.6 39,838 - DVU0033 0.12 +0.1 39,912 - DVU0033 0.24 +0.2 40,133 + DVU0033 0.60 -0.7 40,141 - DVU0033 0.61 +1.1 40,294 + DVU0033 0.86 -1.1 40,295 + DVU0033 0.86 -0.1 40,295 + DVU0033 0.86 +0.4 40,302 - DVU0033 0.87 -1.0 40,319 + -0.0 40,319 + +0.2 40,326 + +0.0 40,380 - -0.1 40,410 + +0.5 40,418 - -1.1 40,426 - +1.6 40,492 + -0.6 40,536 - +0.3 40,573 + -0.2 40,675 + DVU0034 0.19 +0.2 40,685 + DVU0034 0.20 +0.2 40,685 + DVU0034 0.20 +0.2 40,693 - DVU0034 0.21 +0.3 40,744 + DVU0034 0.28 +0.0 40,744 + DVU0034 0.28 +0.7 40,841 + DVU0034 0.40 +1.6 40,946 - DVU0034 0.53 -0.1 41,002 - DVU0034 0.61 +0.6 41,004 + DVU0034 0.61 -0.1 41,059 + DVU0034 0.68 -0.2 41,073 - DVU0034 0.70 +0.4 41,167 + DVU0034 0.82 -1.8 41,207 + DVU0034 0.87 +0.4 41,249 - -1.0 41,327 - -0.6 41,336 + -2.0 41,356 + +0.1 41,361 - -0.1 41,378 - -0.4 41,402 + +0.8 41,447 - -0.6 41,454 + -0.6 41,496 - -0.5 41,526 - -0.4 41,535 + -0.3 41,542 + -1.2 41,549 + -0.1 41,550 - -0.0 41,558 + -0.9 41,583 - +0.0 41,598 - +0.2 41,613 - +0.2 41,613 - -0.3 41,818 + DVU0035 0.68 +2.7 41,836 - DVU0035 0.78 +0.0 41,860 + +0.0 41,879 + +0.2 41,881 + -0.7 42,001 - -0.2 42,002 + -0.2 42,011 - -0.5 42,028 - -0.3 42,083 + -0.2 42,083 + -0.1 42,091 - +0.4 42,091 - -0.5 42,091 - +0.4 42,126 - -0.4 42,242 - -0.7
Or see this region's nucleotide sequence