Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2719

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2717 and DVU2719 are separated by 135 nucleotidesDVU2719 and DVU2720 are separated by 197 nucleotidesDVU2720 and DORF43366 are separated by 20 nucleotidesDORF43366 and DVU2721 are separated by 3 nucleotides DVU2717: DVU2717 - hypothetical protein (TIGR), at 2,822,022 to 2,822,849 DVU2717 DVU2719: DVU2719 - conserved hypothetical protein (TIGR), at 2,822,985 to 2,823,359 DVU2719 DVU2720: DVU2720 - hypothetical protein (TIGR), at 2,823,557 to 2,823,886 DVU2720 DORF43366: DORF43366 - no description, at 2,823,907 to 2,824,041 DORF43366 DVU2721: DVU2721 - phage tail tape measure protein, TP901 family, putative (TIGR), at 2,824,045 to 2,825,985 DVU2721 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -1 0 1 2at 2822.119 kb on - strand, within DVU2717at 2822.126 kb on - strand, within DVU2717at 2822.334 kb on - strand, within DVU2717at 2822.970 kb on + strandat 2823.049 kb on + strand, within DVU2719at 2823.070 kb on + strand, within DVU2719at 2823.109 kb on - strand, within DVU2719at 2823.115 kb on - strand, within DVU2719at 2823.152 kb on + strand, within DVU2719at 2823.208 kb on + strand, within DVU2719at 2823.216 kb on - strand, within DVU2719at 2823.231 kb on + strand, within DVU2719at 2823.288 kb on + strand, within DVU2719at 2823.357 kb on - strandat 2823.403 kb on + strandat 2823.436 kb on + strandat 2823.485 kb on + strandat 2823.506 kb on - strandat 2823.543 kb on + strandat 2823.627 kb on - strand, within DVU2720at 2823.629 kb on - strand, within DVU2720at 2823.632 kb on - strand, within DVU2720at 2823.662 kb on - strand, within DVU2720at 2823.843 kb on - strand, within DVU2720at 2823.882 kb on + strandat 2823.931 kb on + strand, within DORF43366at 2823.939 kb on - strand, within DORF43366at 2823.941 kb on + strand, within DORF43366at 2823.949 kb on - strand, within DORF43366at 2823.950 kb on + strand, within DORF43366at 2823.958 kb on + strand, within DORF43366at 2824.011 kb on - strand, within DORF43366at 2824.114 kb on + strandat 2824.123 kb on - strandat 2824.184 kb on + strandat 2824.216 kb on - strandat 2824.269 kb on + strand, within DVU2721

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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2,822,119 - DVU2717 0.12 -0.4
2,822,126 - DVU2717 0.13 -0.0
2,822,334 - DVU2717 0.38 -0.1
2,822,970 + -0.9
2,823,049 + DVU2719 0.17 -0.0
2,823,070 + DVU2719 0.23 +1.9
2,823,109 - DVU2719 0.33 +0.5
2,823,115 - DVU2719 0.35 -0.3
2,823,152 + DVU2719 0.45 +0.5
2,823,208 + DVU2719 0.59 +0.3
2,823,216 - DVU2719 0.62 +0.2
2,823,231 + DVU2719 0.66 -0.1
2,823,288 + DVU2719 0.81 +0.4
2,823,357 - +0.4
2,823,403 + +0.8
2,823,436 + -0.2
2,823,485 + -0.1
2,823,506 - -1.1
2,823,543 + -0.5
2,823,627 - DVU2720 0.21 -0.0
2,823,629 - DVU2720 0.22 +0.1
2,823,632 - DVU2720 0.23 +0.3
2,823,662 - DVU2720 0.32 -0.7
2,823,843 - DVU2720 0.87 -0.1
2,823,882 + -0.1
2,823,931 + DORF43366 0.18 -0.0
2,823,939 - DORF43366 0.24 -0.2
2,823,941 + DORF43366 0.25 +0.4
2,823,949 - DORF43366 0.31 -0.2
2,823,950 + DORF43366 0.32 +0.3
2,823,958 + DORF43366 0.38 +0.3
2,824,011 - DORF43366 0.77 +0.2
2,824,114 + -0.4
2,824,123 - -0.1
2,824,184 + -0.5
2,824,216 - -0.7
2,824,269 + DVU2721 0.12 -1.7

Or see this region's nucleotide sequence