Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2577 and tRNA-Leu are separated by 131 nucleotides tRNA-Leu and DVU2578 are separated by 108 nucleotides DVU2578 and rrf are separated by 646 nucleotides rrf and rrl are separated by 107 nucleotides
DVU2577: DVU2577 - DNA-binding response regulator, LuxR family (TIGR), at 2,690,356 to 2,691,006
DVU2577
DVU_tRNA-Leu-6: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 2,691,138 to 2,691,224
tRNA-Leu
DVU2578: DVU2578 - response regulator (TIGR), at 2,691,333 to 2,692,022
DVU2578
Dv5SD: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,692,669 to 2,692,785
rrf
Dv23SD: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,692,893 to 2,695,813
rrl
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-2
-1
0
1 at 2690.343 kb on - strand at 2690.358 kb on + strand at 2690.414 kb on - strand at 2690.418 kb on + strand at 2690.455 kb on + strand, within DVU2577 at 2690.520 kb on + strand, within DVU2577 at 2690.535 kb on - strand, within DVU2577 at 2690.648 kb on + strand, within DVU2577 at 2690.650 kb on - strand, within DVU2577 at 2690.699 kb on - strand, within DVU2577 at 2690.921 kb on - strand, within DVU2577 at 2691.032 kb on + strand at 2691.244 kb on - strand at 2691.297 kb on - strand at 2691.509 kb on + strand, within DVU2578 at 2691.560 kb on - strand, within DVU2578 at 2691.596 kb on - strand, within DVU2578 at 2691.684 kb on - strand, within DVU2578 at 2691.707 kb on + strand, within DVU2578 at 2691.715 kb on - strand, within DVU2578 at 2691.734 kb on - strand, within DVU2578 at 2691.758 kb on + strand, within DVU2578 at 2691.792 kb on - strand, within DVU2578 at 2691.802 kb on + strand, within DVU2578 at 2692.073 kb on + strand at 2692.073 kb on + strand at 2692.073 kb on + strand at 2692.081 kb on - strand at 2692.170 kb on + strand at 2692.362 kb on + strand at 2692.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,690,343 - -1.0 2,690,358 + -1.8 2,690,414 - -0.8 2,690,418 + +1.1 2,690,455 + DVU2577 0.15 +0.7 2,690,520 + DVU2577 0.25 +0.6 2,690,535 - DVU2577 0.27 +0.2 2,690,648 + DVU2577 0.45 +0.7 2,690,650 - DVU2577 0.45 -0.3 2,690,699 - DVU2577 0.53 +0.3 2,690,921 - DVU2577 0.87 +0.5 2,691,032 + -0.1 2,691,244 - +1.1 2,691,297 - -0.9 2,691,509 + DVU2578 0.26 -0.0 2,691,560 - DVU2578 0.33 +1.0 2,691,596 - DVU2578 0.38 -0.1 2,691,684 - DVU2578 0.51 +0.0 2,691,707 + DVU2578 0.54 -0.1 2,691,715 - DVU2578 0.55 -0.1 2,691,734 - DVU2578 0.58 +0.7 2,691,758 + DVU2578 0.62 +0.1 2,691,792 - DVU2578 0.67 +0.1 2,691,802 + DVU2578 0.68 -0.3 2,692,073 + +0.7 2,692,073 + +0.1 2,692,073 + +1.4 2,692,081 - +0.6 2,692,170 + -0.2 2,692,362 + -0.2 2,692,415 - +0.3
Or see this region's nucleotide sequence