Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2578

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2577 and tRNA-Leu are separated by 131 nucleotidestRNA-Leu and DVU2578 are separated by 108 nucleotidesDVU2578 and rrf are separated by 646 nucleotidesrrf and rrl are separated by 107 nucleotides DVU2577: DVU2577 - DNA-binding response regulator, LuxR family (TIGR), at 2,690,356 to 2,691,006 DVU2577 DVU_tRNA-Leu-6: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 2,691,138 to 2,691,224 tRNA-Leu DVU2578: DVU2578 - response regulator (TIGR), at 2,691,333 to 2,692,022 DVU2578 Dv5SD: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,692,669 to 2,692,785 rrf Dv23SD: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,692,893 to 2,695,813 rrl Position (kb) 2691 2692 2693Strain fitness (log2 ratio) -2 -1 0 1at 2690.343 kb on - strandat 2690.358 kb on + strandat 2690.414 kb on - strandat 2690.418 kb on + strandat 2690.455 kb on + strand, within DVU2577at 2690.520 kb on + strand, within DVU2577at 2690.535 kb on - strand, within DVU2577at 2690.648 kb on + strand, within DVU2577at 2690.650 kb on - strand, within DVU2577at 2690.699 kb on - strand, within DVU2577at 2690.921 kb on - strand, within DVU2577at 2691.032 kb on + strandat 2691.244 kb on - strandat 2691.297 kb on - strandat 2691.509 kb on + strand, within DVU2578at 2691.560 kb on - strand, within DVU2578at 2691.596 kb on - strand, within DVU2578at 2691.684 kb on - strand, within DVU2578at 2691.707 kb on + strand, within DVU2578at 2691.715 kb on - strand, within DVU2578at 2691.734 kb on - strand, within DVU2578at 2691.758 kb on + strand, within DVU2578at 2691.792 kb on - strand, within DVU2578at 2691.802 kb on + strand, within DVU2578at 2692.073 kb on + strandat 2692.073 kb on + strandat 2692.073 kb on + strandat 2692.081 kb on - strandat 2692.170 kb on + strandat 2692.362 kb on + strandat 2692.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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2,690,343 - -1.0
2,690,358 + -1.8
2,690,414 - -0.8
2,690,418 + +1.1
2,690,455 + DVU2577 0.15 +0.7
2,690,520 + DVU2577 0.25 +0.6
2,690,535 - DVU2577 0.27 +0.2
2,690,648 + DVU2577 0.45 +0.7
2,690,650 - DVU2577 0.45 -0.3
2,690,699 - DVU2577 0.53 +0.3
2,690,921 - DVU2577 0.87 +0.5
2,691,032 + -0.1
2,691,244 - +1.1
2,691,297 - -0.9
2,691,509 + DVU2578 0.26 -0.0
2,691,560 - DVU2578 0.33 +1.0
2,691,596 - DVU2578 0.38 -0.1
2,691,684 - DVU2578 0.51 +0.0
2,691,707 + DVU2578 0.54 -0.1
2,691,715 - DVU2578 0.55 -0.1
2,691,734 - DVU2578 0.58 +0.7
2,691,758 + DVU2578 0.62 +0.1
2,691,792 - DVU2578 0.67 +0.1
2,691,802 + DVU2578 0.68 -0.3
2,692,073 + +0.7
2,692,073 + +0.1
2,692,073 + +1.4
2,692,081 - +0.6
2,692,170 + -0.2
2,692,362 + -0.2
2,692,415 - +0.3

Or see this region's nucleotide sequence