Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2186 and DVU2187 are separated by 428 nucleotides DVU2187 and DVU2188 are separated by 416 nucleotides
DVU2186: DVU2186 - hypothetical protein (TIGR), at 2,283,842 to 2,284,855
DVU2186
DVU2187: DVU2187 - hypothetical protein (TIGR), at 2,285,284 to 2,285,814
DVU2187
DVU2188: DVU2188 - primase, putative (TIGR), at 2,286,231 to 2,288,723
DVU2188
Position (kb)
2285
2286 Strain fitness (log2 ratio)
-1
0
1 at 2284.312 kb on - strand, within DVU2186 at 2284.326 kb on + strand, within DVU2186 at 2284.346 kb on - strand, within DVU2186 at 2284.360 kb on + strand, within DVU2186 at 2284.416 kb on - strand, within DVU2186 at 2284.469 kb on - strand, within DVU2186 at 2284.492 kb on + strand, within DVU2186 at 2284.558 kb on - strand, within DVU2186 at 2284.558 kb on - strand, within DVU2186 at 2284.583 kb on - strand, within DVU2186 at 2284.621 kb on - strand, within DVU2186 at 2284.748 kb on - strand, within DVU2186 at 2284.763 kb on + strand at 2284.857 kb on + strand at 2285.000 kb on - strand at 2285.128 kb on + strand at 2285.155 kb on + strand at 2285.155 kb on + strand at 2285.155 kb on + strand at 2285.183 kb on + strand at 2285.190 kb on + strand at 2285.234 kb on - strand at 2285.297 kb on + strand at 2285.442 kb on - strand, within DVU2187 at 2285.443 kb on - strand, within DVU2187 at 2285.453 kb on - strand, within DVU2187 at 2285.480 kb on + strand, within DVU2187 at 2285.530 kb on - strand, within DVU2187 at 2285.550 kb on - strand, within DVU2187 at 2285.572 kb on + strand, within DVU2187 at 2285.658 kb on + strand, within DVU2187 at 2285.658 kb on + strand, within DVU2187 at 2285.904 kb on - strand at 2285.936 kb on + strand at 2285.937 kb on - strand at 2285.944 kb on - strand at 2286.061 kb on - strand at 2286.061 kb on - strand at 2286.061 kb on - strand at 2286.141 kb on + strand at 2286.151 kb on - strand at 2286.213 kb on + strand at 2286.255 kb on - strand at 2286.255 kb on - strand at 2286.335 kb on - strand at 2286.386 kb on + strand at 2286.386 kb on + strand at 2286.386 kb on + strand at 2286.433 kb on + strand at 2286.484 kb on + strand, within DVU2188 at 2286.566 kb on - strand, within DVU2188 at 2286.660 kb on - strand, within DVU2188 at 2286.691 kb on + strand, within DVU2188 at 2286.751 kb on + strand, within DVU2188 at 2286.799 kb on - strand, within DVU2188 at 2286.802 kb on + strand, within DVU2188
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,284,312 - DVU2186 0.46 -0.2 2,284,326 + DVU2186 0.48 +0.4 2,284,346 - DVU2186 0.50 -0.5 2,284,360 + DVU2186 0.51 +0.0 2,284,416 - DVU2186 0.57 -0.2 2,284,469 - DVU2186 0.62 -0.4 2,284,492 + DVU2186 0.64 +0.1 2,284,558 - DVU2186 0.71 -0.1 2,284,558 - DVU2186 0.71 -0.7 2,284,583 - DVU2186 0.73 +0.4 2,284,621 - DVU2186 0.77 -0.4 2,284,748 - DVU2186 0.89 -0.4 2,284,763 + +0.2 2,284,857 + +0.7 2,285,000 - -0.6 2,285,128 + -0.1 2,285,155 + -0.4 2,285,155 + -0.4 2,285,155 + +0.7 2,285,183 + +0.3 2,285,190 + -0.9 2,285,234 - -0.6 2,285,297 + -0.4 2,285,442 - DVU2187 0.30 -0.4 2,285,443 - DVU2187 0.30 +0.2 2,285,453 - DVU2187 0.32 +1.1 2,285,480 + DVU2187 0.37 -0.3 2,285,530 - DVU2187 0.46 -0.2 2,285,550 - DVU2187 0.50 +0.7 2,285,572 + DVU2187 0.54 +0.3 2,285,658 + DVU2187 0.70 +0.7 2,285,658 + DVU2187 0.70 -0.1 2,285,904 - -0.3 2,285,936 + -1.4 2,285,937 - -0.8 2,285,944 - -0.3 2,286,061 - -0.3 2,286,061 - +0.2 2,286,061 - -0.0 2,286,141 + -0.0 2,286,151 - +0.6 2,286,213 + +0.3 2,286,255 - -0.3 2,286,255 - -0.2 2,286,335 - -0.8 2,286,386 + +0.6 2,286,386 + +0.0 2,286,386 + +1.2 2,286,433 + +0.5 2,286,484 + DVU2188 0.10 -0.4 2,286,566 - DVU2188 0.13 -0.2 2,286,660 - DVU2188 0.17 -0.2 2,286,691 + DVU2188 0.18 +0.2 2,286,751 + DVU2188 0.21 +0.1 2,286,799 - DVU2188 0.23 -0.3 2,286,802 + DVU2188 0.23 -0.4
Or see this region's nucleotide sequence