Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2187

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2186 and DVU2187 are separated by 428 nucleotidesDVU2187 and DVU2188 are separated by 416 nucleotides DVU2186: DVU2186 - hypothetical protein (TIGR), at 2,283,842 to 2,284,855 DVU2186 DVU2187: DVU2187 - hypothetical protein (TIGR), at 2,285,284 to 2,285,814 DVU2187 DVU2188: DVU2188 - primase, putative (TIGR), at 2,286,231 to 2,288,723 DVU2188 Position (kb) 2285 2286Strain fitness (log2 ratio) -1 0 1at 2284.312 kb on - strand, within DVU2186at 2284.326 kb on + strand, within DVU2186at 2284.346 kb on - strand, within DVU2186at 2284.360 kb on + strand, within DVU2186at 2284.416 kb on - strand, within DVU2186at 2284.469 kb on - strand, within DVU2186at 2284.492 kb on + strand, within DVU2186at 2284.558 kb on - strand, within DVU2186at 2284.558 kb on - strand, within DVU2186at 2284.583 kb on - strand, within DVU2186at 2284.621 kb on - strand, within DVU2186at 2284.748 kb on - strand, within DVU2186at 2284.763 kb on + strandat 2284.857 kb on + strandat 2285.000 kb on - strandat 2285.128 kb on + strandat 2285.155 kb on + strandat 2285.155 kb on + strandat 2285.155 kb on + strandat 2285.183 kb on + strandat 2285.190 kb on + strandat 2285.234 kb on - strandat 2285.297 kb on + strandat 2285.442 kb on - strand, within DVU2187at 2285.443 kb on - strand, within DVU2187at 2285.453 kb on - strand, within DVU2187at 2285.480 kb on + strand, within DVU2187at 2285.530 kb on - strand, within DVU2187at 2285.550 kb on - strand, within DVU2187at 2285.572 kb on + strand, within DVU2187at 2285.658 kb on + strand, within DVU2187at 2285.658 kb on + strand, within DVU2187at 2285.904 kb on - strandat 2285.936 kb on + strandat 2285.937 kb on - strandat 2285.944 kb on - strandat 2286.061 kb on - strandat 2286.061 kb on - strandat 2286.061 kb on - strandat 2286.141 kb on + strandat 2286.151 kb on - strandat 2286.213 kb on + strandat 2286.255 kb on - strandat 2286.255 kb on - strandat 2286.335 kb on - strandat 2286.386 kb on + strandat 2286.386 kb on + strandat 2286.386 kb on + strandat 2286.433 kb on + strandat 2286.484 kb on + strand, within DVU2188at 2286.566 kb on - strand, within DVU2188at 2286.660 kb on - strand, within DVU2188at 2286.691 kb on + strand, within DVU2188at 2286.751 kb on + strand, within DVU2188at 2286.799 kb on - strand, within DVU2188at 2286.802 kb on + strand, within DVU2188

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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2,284,312 - DVU2186 0.46 -0.2
2,284,326 + DVU2186 0.48 +0.4
2,284,346 - DVU2186 0.50 -0.5
2,284,360 + DVU2186 0.51 +0.0
2,284,416 - DVU2186 0.57 -0.2
2,284,469 - DVU2186 0.62 -0.4
2,284,492 + DVU2186 0.64 +0.1
2,284,558 - DVU2186 0.71 -0.1
2,284,558 - DVU2186 0.71 -0.7
2,284,583 - DVU2186 0.73 +0.4
2,284,621 - DVU2186 0.77 -0.4
2,284,748 - DVU2186 0.89 -0.4
2,284,763 + +0.2
2,284,857 + +0.7
2,285,000 - -0.6
2,285,128 + -0.1
2,285,155 + -0.4
2,285,155 + -0.4
2,285,155 + +0.7
2,285,183 + +0.3
2,285,190 + -0.9
2,285,234 - -0.6
2,285,297 + -0.4
2,285,442 - DVU2187 0.30 -0.4
2,285,443 - DVU2187 0.30 +0.2
2,285,453 - DVU2187 0.32 +1.1
2,285,480 + DVU2187 0.37 -0.3
2,285,530 - DVU2187 0.46 -0.2
2,285,550 - DVU2187 0.50 +0.7
2,285,572 + DVU2187 0.54 +0.3
2,285,658 + DVU2187 0.70 +0.7
2,285,658 + DVU2187 0.70 -0.1
2,285,904 - -0.3
2,285,936 + -1.4
2,285,937 - -0.8
2,285,944 - -0.3
2,286,061 - -0.3
2,286,061 - +0.2
2,286,061 - -0.0
2,286,141 + -0.0
2,286,151 - +0.6
2,286,213 + +0.3
2,286,255 - -0.3
2,286,255 - -0.2
2,286,335 - -0.8
2,286,386 + +0.6
2,286,386 + +0.0
2,286,386 + +1.2
2,286,433 + +0.5
2,286,484 + DVU2188 0.10 -0.4
2,286,566 - DVU2188 0.13 -0.2
2,286,660 - DVU2188 0.17 -0.2
2,286,691 + DVU2188 0.18 +0.2
2,286,751 + DVU2188 0.21 +0.1
2,286,799 - DVU2188 0.23 -0.3
2,286,802 + DVU2188 0.23 -0.4

Or see this region's nucleotide sequence