Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2183 and DVU2184 are separated by 34 nucleotides DVU2184 and DVU2185 are separated by 3 nucleotides
DVU2183: DVU2183 - hypothetical protein (TIGR), at 2,280,885 to 2,281,616
DVU2183
DVU2184: DVU2184 - DNA-binding domain, excisionase family (TIGR), at 2,281,651 to 2,281,869
DVU2184
DVU2185: DVU2185 - terminase, large subunit, putative (TIGR), at 2,281,873 to 2,283,798
DVU2185
Position (kb)
2281
2282 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2280.682 kb on - strand at 2281.028 kb on - strand, within DVU2183 at 2281.665 kb on - strand at 2281.713 kb on + strand, within DVU2184 at 2281.805 kb on + strand, within DVU2184 at 2281.818 kb on - strand, within DVU2184 at 2281.823 kb on - strand, within DVU2184 at 2281.823 kb on - strand, within DVU2184 at 2281.828 kb on - strand, within DVU2184 at 2281.865 kb on + strand at 2281.879 kb on + strand at 2281.915 kb on + strand at 2281.967 kb on - strand at 2282.026 kb on - strand at 2282.046 kb on - strand at 2282.059 kb on + strand at 2282.153 kb on + strand, within DVU2185 at 2282.161 kb on - strand, within DVU2185 at 2282.185 kb on - strand, within DVU2185 at 2282.248 kb on + strand, within DVU2185 at 2282.256 kb on - strand, within DVU2185 at 2282.289 kb on + strand, within DVU2185 at 2282.332 kb on + strand, within DVU2185 at 2282.382 kb on + strand, within DVU2185 at 2282.387 kb on + strand, within DVU2185 at 2282.395 kb on - strand, within DVU2185 at 2282.395 kb on - strand, within DVU2185 at 2282.401 kb on - strand, within DVU2185 at 2282.418 kb on - strand, within DVU2185 at 2282.420 kb on + strand, within DVU2185 at 2282.435 kb on + strand, within DVU2185 at 2282.491 kb on + strand, within DVU2185 at 2282.504 kb on + strand, within DVU2185 at 2282.546 kb on + strand, within DVU2185 at 2282.648 kb on + strand, within DVU2185 at 2282.653 kb on + strand, within DVU2185 at 2282.656 kb on - strand, within DVU2185 at 2282.658 kb on + strand, within DVU2185 at 2282.658 kb on + strand, within DVU2185 at 2282.661 kb on - strand, within DVU2185 at 2282.661 kb on - strand, within DVU2185 at 2282.661 kb on - strand, within DVU2185 at 2282.687 kb on + strand, within DVU2185 at 2282.768 kb on + strand, within DVU2185 at 2282.804 kb on + strand, within DVU2185 at 2282.812 kb on - strand, within DVU2185
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,280,682 - -0.1 2,281,028 - DVU2183 0.20 -0.7 2,281,665 - +0.4 2,281,713 + DVU2184 0.28 +0.3 2,281,805 + DVU2184 0.70 +1.0 2,281,818 - DVU2184 0.76 +0.2 2,281,823 - DVU2184 0.79 +0.6 2,281,823 - DVU2184 0.79 +0.5 2,281,828 - DVU2184 0.81 -0.1 2,281,865 + -0.1 2,281,879 + +0.2 2,281,915 + +1.7 2,281,967 - +2.2 2,282,026 - +0.6 2,282,046 - -0.3 2,282,059 + -1.9 2,282,153 + DVU2185 0.15 -1.8 2,282,161 - DVU2185 0.15 -0.3 2,282,185 - DVU2185 0.16 +0.4 2,282,248 + DVU2185 0.19 -0.4 2,282,256 - DVU2185 0.20 -0.9 2,282,289 + DVU2185 0.22 -0.5 2,282,332 + DVU2185 0.24 -0.1 2,282,382 + DVU2185 0.26 -0.3 2,282,387 + DVU2185 0.27 -0.3 2,282,395 - DVU2185 0.27 -0.6 2,282,395 - DVU2185 0.27 +0.1 2,282,401 - DVU2185 0.27 -0.5 2,282,418 - DVU2185 0.28 -0.4 2,282,420 + DVU2185 0.28 -0.3 2,282,435 + DVU2185 0.29 +0.3 2,282,491 + DVU2185 0.32 +1.1 2,282,504 + DVU2185 0.33 +0.6 2,282,546 + DVU2185 0.35 -0.4 2,282,648 + DVU2185 0.40 -0.2 2,282,653 + DVU2185 0.40 +0.2 2,282,656 - DVU2185 0.41 -0.2 2,282,658 + DVU2185 0.41 -1.1 2,282,658 + DVU2185 0.41 -0.4 2,282,661 - DVU2185 0.41 -0.9 2,282,661 - DVU2185 0.41 +1.3 2,282,661 - DVU2185 0.41 -0.6 2,282,687 + DVU2185 0.42 +0.3 2,282,768 + DVU2185 0.46 -0.2 2,282,804 + DVU2185 0.48 +0.3 2,282,812 - DVU2185 0.49 +0.7
Or see this region's nucleotide sequence