Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2171 and DVU2172 overlap by 1 nucleotides DVU2172 and DVU2173 overlap by 8 nucleotides DVU2173 and DVU2174 are separated by 113 nucleotides DVU2174 and DVU2175 are separated by 53 nucleotides
DVU2171: DVU2171 - portal protein (TIGR), at 2,268,224 to 2,269,777
DVU2171
DVU2172: DVU2172 - hypothetical protein (TIGR), at 2,269,777 to 2,269,998
DVU2172
DVU2173: DVU2173 - hypothetical protein (TIGR), at 2,269,991 to 2,270,116
DVU2173
DVU2174: DVU2174 - hypothetical protein (TIGR), at 2,270,230 to 2,270,907
DVU2174
DVU2175: DVU2175 - adenine specific DNA methyltransferase, putative (TIGR), at 2,270,961 to 2,275,748
DVU2175
Position (kb)
2269
2270 Strain fitness (log2 ratio)
-1
0
1 at 2268.796 kb on - strand, within DVU2171 at 2268.842 kb on - strand, within DVU2171 at 2269.058 kb on + strand, within DVU2171 at 2269.117 kb on + strand, within DVU2171 at 2269.132 kb on - strand, within DVU2171 at 2269.151 kb on + strand, within DVU2171 at 2269.189 kb on + strand, within DVU2171 at 2269.321 kb on + strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.360 kb on - strand, within DVU2171 at 2269.370 kb on + strand, within DVU2171 at 2269.378 kb on - strand, within DVU2171 at 2269.593 kb on + strand, within DVU2171 at 2269.625 kb on + strand at 2269.628 kb on - strand at 2269.752 kb on + strand at 2269.793 kb on + strand at 2269.830 kb on - strand, within DVU2172 at 2269.888 kb on + strand, within DVU2172 at 2269.888 kb on + strand, within DVU2172 at 2270.005 kb on + strand, within DVU2173 at 2270.023 kb on + strand, within DVU2173 at 2270.023 kb on + strand, within DVU2173 at 2270.031 kb on - strand, within DVU2173 at 2270.328 kb on - strand, within DVU2174 at 2270.436 kb on + strand, within DVU2174 at 2270.436 kb on + strand, within DVU2174
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,268,796 - DVU2171 0.37 +0.2 2,268,842 - DVU2171 0.40 -0.3 2,269,058 + DVU2171 0.54 -0.4 2,269,117 + DVU2171 0.57 -0.8 2,269,132 - DVU2171 0.58 -0.9 2,269,151 + DVU2171 0.60 -0.5 2,269,189 + DVU2171 0.62 -0.1 2,269,321 + DVU2171 0.71 -0.1 2,269,360 - DVU2171 0.73 +0.1 2,269,360 - DVU2171 0.73 -0.1 2,269,360 - DVU2171 0.73 +0.3 2,269,360 - DVU2171 0.73 -0.5 2,269,370 + DVU2171 0.74 -0.6 2,269,378 - DVU2171 0.74 +0.2 2,269,593 + DVU2171 0.88 -1.0 2,269,625 + +1.0 2,269,628 - -0.2 2,269,752 + -0.2 2,269,793 + -0.2 2,269,830 - DVU2172 0.24 +0.5 2,269,888 + DVU2172 0.50 -0.1 2,269,888 + DVU2172 0.50 +0.4 2,270,005 + DVU2173 0.11 -0.4 2,270,023 + DVU2173 0.25 +1.0 2,270,023 + DVU2173 0.25 -0.6 2,270,031 - DVU2173 0.32 -0.1 2,270,328 - DVU2174 0.14 -0.0 2,270,436 + DVU2174 0.30 -0.3 2,270,436 + DVU2174 0.30 -0.0
Or see this region's nucleotide sequence