Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2004 and DVU2006 are separated by 305 nucleotides DVU2006 and DVU2007 are separated by 110 nucleotides DVU2007 and DVU2008 are separated by 223 nucleotides DVU2008 and DVU2009 are separated by 2 nucleotides DVU2009 and DVU2010 overlap by 20 nucleotides
DVU2004: DVU2004 - ISDvu4, transposase (TIGR), at 2,086,357 to 2,087,406
DVU2004
DVU2006: DVU2006 - hypothetical protein (TIGR), at 2,087,712 to 2,087,867
DVU2006
DVU2007: DVU2007 - nuclease, putative (TIGR), at 2,087,978 to 2,088,394
DVU2007
DVU2008: DVU2008 - hypothetical protein (TIGR), at 2,088,618 to 2,088,752
DVU2008
DVU2009: DVU2009 - conserved domain protein (TIGR), at 2,088,755 to 2,089,138
DVU2009
DVU2010: DVU2010 - ISD1, transposase OrfB (TIGR), at 2,089,119 to 2,089,943
DVU2010
Position (kb)
2087
2088
2089 Strain fitness (log2 ratio)
-1
0
1 at 2087.449 kb on + strand at 2087.484 kb on + strand at 2087.540 kb on - strand at 2088.004 kb on - strand at 2088.072 kb on - strand, within DVU2007 at 2088.076 kb on + strand, within DVU2007 at 2088.098 kb on - strand, within DVU2007 at 2088.202 kb on + strand, within DVU2007 at 2088.989 kb on + strand, within DVU2009 at 2089.056 kb on - strand, within DVU2009 at 2089.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 2,087,449 + -0.4 2,087,484 + -0.1 2,087,540 - -0.4 2,088,004 - -0.2 2,088,072 - DVU2007 0.23 -1.1 2,088,076 + DVU2007 0.24 +0.6 2,088,098 - DVU2007 0.29 +0.6 2,088,202 + DVU2007 0.54 -0.1 2,088,989 + DVU2009 0.61 -0.0 2,089,056 - DVU2009 0.78 -0.4 2,089,125 - +0.5
Or see this region's nucleotide sequence