Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2007

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2004 and DVU2006 are separated by 305 nucleotidesDVU2006 and DVU2007 are separated by 110 nucleotidesDVU2007 and DVU2008 are separated by 223 nucleotidesDVU2008 and DVU2009 are separated by 2 nucleotidesDVU2009 and DVU2010 overlap by 20 nucleotides DVU2004: DVU2004 - ISDvu4, transposase (TIGR), at 2,086,357 to 2,087,406 DVU2004 DVU2006: DVU2006 - hypothetical protein (TIGR), at 2,087,712 to 2,087,867 DVU2006 DVU2007: DVU2007 - nuclease, putative (TIGR), at 2,087,978 to 2,088,394 DVU2007 DVU2008: DVU2008 - hypothetical protein (TIGR), at 2,088,618 to 2,088,752 DVU2008 DVU2009: DVU2009 - conserved domain protein (TIGR), at 2,088,755 to 2,089,138 DVU2009 DVU2010: DVU2010 - ISD1, transposase OrfB (TIGR), at 2,089,119 to 2,089,943 DVU2010 Position (kb) 2087 2088 2089Strain fitness (log2 ratio) -1 0 1at 2087.449 kb on + strandat 2087.484 kb on + strandat 2087.540 kb on - strandat 2088.004 kb on - strandat 2088.072 kb on - strand, within DVU2007at 2088.076 kb on + strand, within DVU2007at 2088.098 kb on - strand, within DVU2007at 2088.202 kb on + strand, within DVU2007at 2088.989 kb on + strand, within DVU2009at 2089.056 kb on - strand, within DVU2009at 2089.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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2,087,449 + -0.4
2,087,484 + -0.1
2,087,540 - -0.4
2,088,004 - -0.2
2,088,072 - DVU2007 0.23 -1.1
2,088,076 + DVU2007 0.24 +0.6
2,088,098 - DVU2007 0.29 +0.6
2,088,202 + DVU2007 0.54 -0.1
2,088,989 + DVU2009 0.61 -0.0
2,089,056 - DVU2009 0.78 -0.4
2,089,125 - +0.5

Or see this region's nucleotide sequence