Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1859

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1858 and DVU1859 are separated by 355 nucleotidesDVU1859 and cutE overlap by 16 nucleotides DVU1858: DVU1858 - cold shock domain protein (TIGR), at 1,925,817 to 1,926,353 DVU1858 DVU1859: DVU1859 - hypothetical protein (TIGR), at 1,926,709 to 1,926,834 DVU1859 DVU1860: cutE - apolipoprotein N-acyltransferase (TIGR), at 1,926,819 to 1,928,327 cutE Position (kb) 1926 1927Strain fitness (log2 ratio) -2 -1 0 1at 1925.771 kb on - strandat 1925.879 kb on + strand, within DVU1858at 1926.027 kb on - strand, within DVU1858at 1926.058 kb on + strand, within DVU1858at 1926.133 kb on + strand, within DVU1858at 1926.136 kb on - strand, within DVU1858at 1926.137 kb on + strand, within DVU1858at 1926.143 kb on - strand, within DVU1858at 1926.192 kb on - strand, within DVU1858at 1926.319 kb on + strandat 1926.321 kb on + strandat 1926.337 kb on - strandat 1926.418 kb on + strandat 1926.505 kb on + strandat 1926.682 kb on + strandat 1926.694 kb on - strandat 1926.724 kb on - strand, within DVU1859at 1926.730 kb on - strand, within DVU1859at 1926.737 kb on - strand, within DVU1859at 1926.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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1,925,771 - -0.0
1,925,879 + DVU1858 0.12 -0.3
1,926,027 - DVU1858 0.39 +0.1
1,926,058 + DVU1858 0.45 -0.1
1,926,133 + DVU1858 0.59 -0.4
1,926,136 - DVU1858 0.59 +0.4
1,926,137 + DVU1858 0.60 -0.5
1,926,143 - DVU1858 0.61 +0.4
1,926,192 - DVU1858 0.70 -0.8
1,926,319 + -1.6
1,926,321 + +1.6
1,926,337 - -0.0
1,926,418 + +0.0
1,926,505 + -0.8
1,926,682 + -1.8
1,926,694 - +0.0
1,926,724 - DVU1859 0.12 +0.6
1,926,730 - DVU1859 0.17 -0.3
1,926,737 - DVU1859 0.22 +0.9
1,926,827 - -0.4

Or see this region's nucleotide sequence