Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1838

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcca and DVU1837 are separated by 100 nucleotidesDVU1837 and trxB-2 overlap by 59 nucleotidestrxB-2 and trx overlap by 1 nucleotidestrx and gcp are separated by 112 nucleotides DVU1836: cca - tRNA nucleotidyltransferase, putative (TIGR), at 1,906,976 to 1,908,127 cca DVU1837: DVU1837 - competence protein, putative (TIGR), at 1,908,228 to 1,909,010 DVU1837 DVU1838: trxB-2 - thioredoxin reductase (TIGR), at 1,908,952 to 1,909,875 trxB-2 DVU1839: trx - thioredoxin (TIGR), at 1,909,875 to 1,910,198 trx DVU1840: gcp - metalloendopeptidase, putative, glycoprotease family (TIGR), at 1,910,311 to 1,911,396 gcp Position (kb) 1908 1909 1910Strain fitness (log2 ratio) -1 0 1at 1907.995 kb on - strand, within ccaat 1908.083 kb on - strandat 1908.974 kb on - strandat 1909.046 kb on - strand, within trxB-2at 1909.290 kb on - strand, within trxB-2at 1909.552 kb on - strand, within trxB-2

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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1,907,995 - cca DVU1836 0.88 +0.3
1,908,083 - -0.5
1,908,974 - +0.2
1,909,046 - trxB-2 DVU1838 0.10 +0.5
1,909,290 - trxB-2 DVU1838 0.37 +0.1
1,909,552 - trxB-2 DVU1838 0.65 +1.5

Or see this region's nucleotide sequence