Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1815

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcoxB and DVU1813 are separated by 9 nucleotidesDVU1813 and DVU1814 are separated by 8 nucleotidesDVU1814 and DVU1815 are separated by 10 nucleotidesDVU1815 and DVU1816 are separated by 23 nucleotides DVU1812: coxB - cytochrome c oxidase, subunit II, putative (TIGR), at 1,876,687 to 1,877,967 coxB DVU1813: DVU1813 - hypothetical protein (TIGR), at 1,877,977 to 1,878,270 DVU1813 DVU1814: DVU1814 - cytochrome c oxidase, subunit III, putative (TIGR), at 1,878,279 to 1,878,890 DVU1814 DVU1815: DVU1815 - cytochrome c oxidase, subunit I, putative (TIGR), at 1,878,901 to 1,880,526 DVU1815 DVU1816: DVU1816 - conserved hypothetical protein (TIGR), at 1,880,550 to 1,881,305 DVU1816 Position (kb) 1878 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1at 1877.983 kb on - strandat 1878.064 kb on + strand, within DVU1813at 1878.104 kb on - strand, within DVU1813at 1878.239 kb on - strand, within DVU1813at 1878.241 kb on - strandat 1878.265 kb on + strandat 1878.523 kb on - strand, within DVU1814at 1878.671 kb on + strand, within DVU1814at 1878.711 kb on + strand, within DVU1814at 1878.717 kb on - strand, within DVU1814at 1878.717 kb on - strand, within DVU1814at 1878.859 kb on + strandat 1878.871 kb on - strandat 1878.967 kb on + strandat 1879.133 kb on + strand, within DVU1815at 1879.141 kb on - strand, within DVU1815at 1879.141 kb on - strand, within DVU1815at 1879.153 kb on + strand, within DVU1815at 1879.162 kb on - strand, within DVU1815at 1879.402 kb on + strand, within DVU1815at 1879.470 kb on - strand, within DVU1815at 1879.560 kb on - strand, within DVU1815at 1879.562 kb on + strand, within DVU1815at 1879.577 kb on + strand, within DVU1815at 1879.664 kb on - strand, within DVU1815at 1879.669 kb on - strand, within DVU1815at 1879.774 kb on - strand, within DVU1815at 1879.829 kb on - strand, within DVU1815at 1879.855 kb on - strand, within DVU1815at 1879.885 kb on - strand, within DVU1815at 1879.885 kb on - strand, within DVU1815at 1879.939 kb on + strand, within DVU1815at 1879.939 kb on + strand, within DVU1815at 1879.939 kb on + strand, within DVU1815at 1879.947 kb on - strand, within DVU1815at 1879.947 kb on - strand, within DVU1815at 1880.006 kb on + strand, within DVU1815at 1880.199 kb on + strand, within DVU1815at 1880.199 kb on - strand, within DVU1815at 1880.254 kb on + strand, within DVU1815at 1880.262 kb on - strand, within DVU1815at 1880.312 kb on + strand, within DVU1815at 1880.439 kb on - strandat 1880.451 kb on + strandat 1880.725 kb on + strand, within DVU1816at 1880.846 kb on + strand, within DVU1816at 1880.854 kb on - strand, within DVU1816at 1880.887 kb on + strand, within DVU1816at 1880.900 kb on - strand, within DVU1816at 1881.029 kb on - strand, within DVU1816at 1881.039 kb on - strand, within DVU1816at 1881.076 kb on - strand, within DVU1816at 1881.331 kb on - strandat 1881.407 kb on - strandat 1881.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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1,877,983 - -0.1
1,878,064 + DVU1813 0.30 +0.3
1,878,104 - DVU1813 0.43 -0.8
1,878,239 - DVU1813 0.89 -0.1
1,878,241 - -0.2
1,878,265 + -1.9
1,878,523 - DVU1814 0.40 -0.2
1,878,671 + DVU1814 0.64 -0.4
1,878,711 + DVU1814 0.71 +0.2
1,878,717 - DVU1814 0.72 +0.3
1,878,717 - DVU1814 0.72 -0.3
1,878,859 + +0.1
1,878,871 - +0.1
1,878,967 + -0.2
1,879,133 + DVU1815 0.14 +0.5
1,879,141 - DVU1815 0.15 -0.0
1,879,141 - DVU1815 0.15 -0.2
1,879,153 + DVU1815 0.15 +0.3
1,879,162 - DVU1815 0.16 -0.4
1,879,402 + DVU1815 0.31 +0.4
1,879,470 - DVU1815 0.35 +1.0
1,879,560 - DVU1815 0.41 +0.4
1,879,562 + DVU1815 0.41 -1.1
1,879,577 + DVU1815 0.42 +0.1
1,879,664 - DVU1815 0.47 +0.2
1,879,669 - DVU1815 0.47 +0.0
1,879,774 - DVU1815 0.54 +0.7
1,879,829 - DVU1815 0.57 +0.3
1,879,855 - DVU1815 0.59 +0.3
1,879,885 - DVU1815 0.61 +0.6
1,879,885 - DVU1815 0.61 -0.5
1,879,939 + DVU1815 0.64 -0.7
1,879,939 + DVU1815 0.64 -1.9
1,879,939 + DVU1815 0.64 -0.6
1,879,947 - DVU1815 0.64 +0.7
1,879,947 - DVU1815 0.64 +0.7
1,880,006 + DVU1815 0.68 +0.1
1,880,199 + DVU1815 0.80 -0.3
1,880,199 - DVU1815 0.80 -0.3
1,880,254 + DVU1815 0.83 -0.3
1,880,262 - DVU1815 0.84 +0.8
1,880,312 + DVU1815 0.87 +0.7
1,880,439 - -0.2
1,880,451 + -0.2
1,880,725 + DVU1816 0.23 -1.6
1,880,846 + DVU1816 0.39 -0.7
1,880,854 - DVU1816 0.40 -0.2
1,880,887 + DVU1816 0.45 +0.4
1,880,900 - DVU1816 0.46 -0.2
1,881,029 - DVU1816 0.63 -1.0
1,881,039 - DVU1816 0.65 -0.3
1,881,076 - DVU1816 0.70 -0.3
1,881,331 - -0.7
1,881,407 - +0.1
1,881,479 + -0.5

Or see this region's nucleotide sequence