Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1727

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1724 and DVU1725 overlap by 14 nucleotidesDVU1725 and DVU1726 are separated by 135 nucleotidesDVU1726 and DVU1727 overlap by 4 nucleotidesDVU1727 and DVU1728 overlap by 1 nucleotidesDVU1728 and DVU1729 are separated by 270 nucleotidesDVU1729 and DVU1730 are separated by 9 nucleotides DVU1724: DVU1724 - phage uncharacterized protein, putative (TIGR), at 1,797,329 to 1,798,933 DVU1724 DVU1725: DVU1725 - conserved hypothetical protein (TIGR), at 1,798,920 to 1,799,528 DVU1725 DVU1726: DVU1726 - hypothetical protein (TIGR), at 1,799,664 to 1,799,912 DVU1726 DVU1727: DVU1727 - hypothetical protein (TIGR), at 1,799,909 to 1,800,259 DVU1727 DVU1728: DVU1728 - conserved hypothetical protein (TIGR), at 1,800,259 to 1,800,675 DVU1728 DVU1729: DVU1729 - killer protein, putative (TIGR), at 1,800,946 to 1,801,224 DVU1729 DVU1730: DVU1730 - DNA-binding protein (TIGR), at 1,801,234 to 1,801,539 DVU1730 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -1 0 1 2at 1798.933 kb on - strandat 1798.938 kb on - strandat 1799.036 kb on + strand, within DVU1725at 1799.044 kb on - strand, within DVU1725at 1799.141 kb on + strand, within DVU1725at 1799.149 kb on - strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.218 kb on + strand, within DVU1725at 1799.224 kb on + strand, within DVU1725at 1799.225 kb on - strand, within DVU1725at 1799.274 kb on + strand, within DVU1725at 1799.287 kb on + strand, within DVU1725at 1799.397 kb on + strand, within DVU1725at 1799.433 kb on - strand, within DVU1725at 1799.524 kb on + strandat 1799.806 kb on - strand, within DVU1726at 1799.970 kb on - strand, within DVU1727at 1799.994 kb on + strand, within DVU1727at 1800.048 kb on - strand, within DVU1727at 1800.064 kb on + strand, within DVU1727at 1800.593 kb on - strand, within DVU1728at 1800.632 kb on + strand, within DVU1728at 1800.671 kb on + strandat 1800.683 kb on + strandat 1800.683 kb on + strandat 1800.753 kb on + strandat 1800.777 kb on - strandat 1800.801 kb on - strandat 1800.859 kb on - strandat 1800.942 kb on + strandat 1801.033 kb on - strand, within DVU1729at 1801.055 kb on + strand, within DVU1729at 1801.108 kb on + strand, within DVU1729at 1801.132 kb on - strand, within DVU1729

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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1,798,933 - +1.4
1,798,938 - -0.4
1,799,036 + DVU1725 0.19 +0.5
1,799,044 - DVU1725 0.20 -0.1
1,799,141 + DVU1725 0.36 -0.1
1,799,149 - DVU1725 0.38 -0.9
1,799,171 + DVU1725 0.41 +0.2
1,799,171 + DVU1725 0.41 -0.8
1,799,179 - DVU1725 0.43 +0.3
1,799,179 - DVU1725 0.43 -0.3
1,799,218 + DVU1725 0.49 +0.3
1,799,224 + DVU1725 0.50 +1.9
1,799,225 - DVU1725 0.50 -0.1
1,799,274 + DVU1725 0.58 +0.6
1,799,287 + DVU1725 0.60 +0.7
1,799,397 + DVU1725 0.78 -0.0
1,799,433 - DVU1725 0.84 -0.0
1,799,524 + -1.1
1,799,806 - DVU1726 0.57 +0.3
1,799,970 - DVU1727 0.17 +0.1
1,799,994 + DVU1727 0.24 -0.6
1,800,048 - DVU1727 0.40 +0.5
1,800,064 + DVU1727 0.44 +0.1
1,800,593 - DVU1728 0.80 -0.6
1,800,632 + DVU1728 0.89 +0.2
1,800,671 + -0.2
1,800,683 + +0.4
1,800,683 + -0.2
1,800,753 + -0.0
1,800,777 - +0.1
1,800,801 - +0.0
1,800,859 - +0.1
1,800,942 + -0.2
1,801,033 - DVU1729 0.31 +0.6
1,801,055 + DVU1729 0.39 -0.5
1,801,108 + DVU1729 0.58 +0.5
1,801,132 - DVU1729 0.67 +0.3

Or see this region's nucleotide sequence