Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1557

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1555 and DVU1556 are separated by 4 nucleotidesDVU1556 and DVU1557 are separated by 8 nucleotidesDVU1557 and DVU1558 overlap by 4 nucleotides DVU1555: DVU1555 - hypothetical protein (TIGR), at 1,632,716 to 1,633,168 DVU1555 DVU1556: DVU1556 - conserved domain protein (TIGR), at 1,633,173 to 1,634,066 DVU1556 DVU1557: DVU1557 - hypothetical protein (TIGR), at 1,634,075 to 1,634,290 DVU1557 DVU1558: DVU1558 - cysteine-rich domain/iron-sulfur cluster-binding domain protein (TIGR), at 1,634,287 to 1,636,680 DVU1558 Position (kb) 1634 1635Strain fitness (log2 ratio) -1 0 1 2at 1633.178 kb on + strandat 1633.295 kb on + strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.330 kb on - strand, within DVU1556at 1633.400 kb on - strand, within DVU1556at 1633.587 kb on + strand, within DVU1556at 1633.798 kb on + strand, within DVU1556at 1633.887 kb on - strand, within DVU1556at 1633.943 kb on - strand, within DVU1556at 1633.985 kb on - strandat 1634.104 kb on + strand, within DVU1557at 1634.251 kb on + strand, within DVU1557at 1634.251 kb on + strand, within DVU1557at 1634.251 kb on - strand, within DVU1557at 1634.254 kb on - strand, within DVU1557at 1634.285 kb on + strandat 1634.321 kb on + strandat 1634.327 kb on + strandat 1634.394 kb on + strandat 1634.581 kb on - strand, within DVU1558at 1634.665 kb on + strand, within DVU1558at 1634.665 kb on - strand, within DVU1558at 1634.673 kb on - strand, within DVU1558at 1634.737 kb on - strand, within DVU1558at 1634.737 kb on - strand, within DVU1558at 1634.739 kb on + strand, within DVU1558at 1634.761 kb on + strand, within DVU1558at 1634.773 kb on - strand, within DVU1558at 1634.898 kb on + strand, within DVU1558at 1634.953 kb on + strand, within DVU1558at 1635.001 kb on - strand, within DVU1558at 1635.027 kb on + strand, within DVU1558at 1635.027 kb on + strand, within DVU1558at 1635.027 kb on + strand, within DVU1558at 1635.035 kb on - strand, within DVU1558at 1635.035 kb on - strand, within DVU1558at 1635.035 kb on - strand, within DVU1558at 1635.035 kb on - strand, within DVU1558at 1635.059 kb on + strand, within DVU1558at 1635.106 kb on - strand, within DVU1558at 1635.108 kb on + strand, within DVU1558at 1635.108 kb on + strand, within DVU1558at 1635.141 kb on + strand, within DVU1558at 1635.141 kb on + strand, within DVU1558at 1635.151 kb on + strand, within DVU1558at 1635.156 kb on + strand, within DVU1558at 1635.156 kb on + strand, within DVU1558at 1635.159 kb on - strand, within DVU1558at 1635.228 kb on - strand, within DVU1558

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
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1,633,178 + +0.9
1,633,295 + DVU1556 0.14 +0.1
1,633,330 - DVU1556 0.18 -1.2
1,633,330 - DVU1556 0.18 +0.4
1,633,330 - DVU1556 0.18 +0.4
1,633,400 - DVU1556 0.25 +0.1
1,633,587 + DVU1556 0.46 -0.5
1,633,798 + DVU1556 0.70 -0.1
1,633,887 - DVU1556 0.80 -0.1
1,633,943 - DVU1556 0.86 -0.7
1,633,985 - -0.2
1,634,104 + DVU1557 0.13 +0.3
1,634,251 + DVU1557 0.81 -0.8
1,634,251 + DVU1557 0.81 -0.3
1,634,251 - DVU1557 0.81 +0.9
1,634,254 - DVU1557 0.83 +1.0
1,634,285 + -0.1
1,634,321 + -0.6
1,634,327 + -0.1
1,634,394 + -0.2
1,634,581 - DVU1558 0.12 -0.7
1,634,665 + DVU1558 0.16 +0.5
1,634,665 - DVU1558 0.16 -0.1
1,634,673 - DVU1558 0.16 -0.4
1,634,737 - DVU1558 0.19 -0.5
1,634,737 - DVU1558 0.19 +0.2
1,634,739 + DVU1558 0.19 +0.1
1,634,761 + DVU1558 0.20 +0.8
1,634,773 - DVU1558 0.20 -0.1
1,634,898 + DVU1558 0.26 +2.5
1,634,953 + DVU1558 0.28 +0.3
1,635,001 - DVU1558 0.30 -0.4
1,635,027 + DVU1558 0.31 +0.1
1,635,027 + DVU1558 0.31 +0.5
1,635,027 + DVU1558 0.31 +0.7
1,635,035 - DVU1558 0.31 -0.8
1,635,035 - DVU1558 0.31 -0.4
1,635,035 - DVU1558 0.31 +0.0
1,635,035 - DVU1558 0.31 +0.0
1,635,059 + DVU1558 0.32 -0.9
1,635,106 - DVU1558 0.34 +0.7
1,635,108 + DVU1558 0.34 +0.0
1,635,108 + DVU1558 0.34 -0.8
1,635,141 + DVU1558 0.36 -0.9
1,635,141 + DVU1558 0.36 +0.0
1,635,151 + DVU1558 0.36 -0.7
1,635,156 + DVU1558 0.36 +0.2
1,635,156 + DVU1558 0.36 +0.8
1,635,159 - DVU1558 0.36 -0.0
1,635,228 - DVU1558 0.39 +0.0

Or see this region's nucleotide sequence