Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1518 and DVU1519 are separated by 56 nucleotides DVU1519 and DVU1520 are separated by 57 nucleotides DVU1520 and DVU1521 overlap by 11 nucleotides DVU1521 and DVU1522 are separated by 429 nucleotides
DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397
DVU1518
DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107
DVU1519
DVU1520: DVU1520 - hypothetical protein (TIGR), at 1,589,165 to 1,590,151
DVU1520
DVU1521: DVU1521 - hypothetical protein (TIGR), at 1,590,141 to 1,590,320
DVU1521
DVU1522: DVU1522 - hypothetical protein (TIGR), at 1,590,750 to 1,591,145
DVU1522
Position (kb)
1589
1590
1591 Strain fitness (log2 ratio)
-2
-1
0
1 at 1588.166 kb on + strand, within DVU1518 at 1588.195 kb on - strand, within DVU1518 at 1588.210 kb on - strand, within DVU1518 at 1589.311 kb on + strand, within DVU1520 at 1589.963 kb on + strand, within DVU1520 at 1590.162 kb on + strand, within DVU1521 at 1590.493 kb on + strand at 1590.501 kb on + strand at 1590.509 kb on - strand at 1590.524 kb on + strand at 1590.535 kb on - strand at 1590.726 kb on - strand at 1590.768 kb on + strand at 1590.768 kb on + strand at 1590.786 kb on - strand at 1590.792 kb on + strand, within DVU1522 at 1590.829 kb on - strand, within DVU1522 at 1590.869 kb on - strand, within DVU1522 at 1590.875 kb on - strand, within DVU1522 at 1590.896 kb on - strand, within DVU1522 at 1590.998 kb on + strand, within DVU1522 at 1591.006 kb on - strand, within DVU1522 at 1591.044 kb on - strand, within DVU1522 at 1591.066 kb on - strand, within DVU1522 at 1591.091 kb on + strand, within DVU1522 at 1591.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 1,588,166 + DVU1518 0.20 -0.5 1,588,195 - DVU1518 0.30 -2.4 1,588,210 - DVU1518 0.35 -0.4 1,589,311 + DVU1520 0.15 +1.1 1,589,963 + DVU1520 0.81 +1.1 1,590,162 + DVU1521 0.12 +0.1 1,590,493 + -0.5 1,590,501 + -0.2 1,590,509 - -0.2 1,590,524 + +0.2 1,590,535 - +0.0 1,590,726 - -0.0 1,590,768 + -0.5 1,590,768 + -0.2 1,590,786 - -0.3 1,590,792 + DVU1522 0.11 -1.5 1,590,829 - DVU1522 0.20 +0.9 1,590,869 - DVU1522 0.30 -0.6 1,590,875 - DVU1522 0.32 -0.1 1,590,896 - DVU1522 0.37 -0.7 1,590,998 + DVU1522 0.63 -0.2 1,591,006 - DVU1522 0.65 -0.4 1,591,044 - DVU1522 0.74 -0.2 1,591,066 - DVU1522 0.80 -0.1 1,591,091 + DVU1522 0.86 +0.4 1,591,147 + +0.2
Or see this region's nucleotide sequence