Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DsrM and DVU1291 are separated by 34 nucleotides DVU1291 and DVU1292 overlap by 71 nucleotides DVU1292 and DORF10446 are separated by 95 nucleotides
DVU1290: DsrM - Inner membrane protein binds 2 heme b (Shelley Haveman), at 1,384,047 to 1,385,051
DsrM
DVU1291: DVU1291 - hypothetical protein (TIGR), at 1,385,086 to 1,385,625
DVU1291
DVU1292: DVU1292 - hypothetical protein (TIGR), at 1,385,555 to 1,385,728
DVU1292
DORF10446: DORF10446 - SEED: FIG00604570: hypothetical protein, at 1,385,824 to 1,386,771
DORF10446
Position (kb)
1385
1386 Strain fitness (log2 ratio)
-1
0
1 at 1385.651 kb on - strand, within DVU1292 at 1385.695 kb on - strand, within DVU1292 at 1385.721 kb on - strand at 1385.723 kb on + strand at 1385.860 kb on + strand at 1385.955 kb on + strand, within DORF10446 at 1385.981 kb on - strand, within DORF10446 at 1386.023 kb on + strand, within DORF10446 at 1386.113 kb on + strand, within DORF10446 at 1386.289 kb on + strand, within DORF10446 at 1386.333 kb on + strand, within DORF10446 at 1386.430 kb on + strand, within DORF10446 at 1386.433 kb on - strand, within DORF10446 at 1386.473 kb on + strand, within DORF10446 at 1386.517 kb on + strand, within DORF10446 at 1386.549 kb on - strand, within DORF10446 at 1386.631 kb on - strand, within DORF10446 at 1386.704 kb on + strand at 1386.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 1,385,651 - DVU1292 0.55 +0.0 1,385,695 - DVU1292 0.80 +0.2 1,385,721 - +0.9 1,385,723 + -0.5 1,385,860 + -0.4 1,385,955 + DORF10446 0.14 -0.6 1,385,981 - DORF10446 0.17 -0.3 1,386,023 + DORF10446 0.21 +0.2 1,386,113 + DORF10446 0.30 +0.0 1,386,289 + DORF10446 0.49 +0.2 1,386,333 + DORF10446 0.54 -0.3 1,386,430 + DORF10446 0.64 +0.0 1,386,433 - DORF10446 0.64 -0.0 1,386,473 + DORF10446 0.68 +0.8 1,386,517 + DORF10446 0.73 -0.6 1,386,549 - DORF10446 0.76 -0.7 1,386,631 - DORF10446 0.85 -0.2 1,386,704 + +0.1 1,386,727 + -0.1
Or see this region's nucleotide sequence