Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0910
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
1,003,258 | + | DVU0908 | 0.83 | -2.1 | |
1,003,324 | + | DVU0908 | 0.87 | -2.8 | |
1,003,350 | + | DVU0908 | 0.89 | -1.2 | |
1,003,350 | + | DVU0908 | 0.89 | -0.6 | |
1,003,429 | + | -1.9 | |||
1,003,552 | + | -1.0 | |||
1,003,640 | - | -1.2 | |||
1,003,786 | + | DVU0909 | 0.23 | -0.2 | |
1,003,786 | + | DVU0909 | 0.23 | -0.2 | |
1,003,791 | + | DVU0909 | 0.24 | +0.9 | |
1,003,794 | - | DVU0909 | 0.25 | +0.0 | |
1,003,940 | - | DVU0909 | 0.62 | -0.2 | |
1,004,050 | - | DVU0909 | 0.89 | +0.3 | |
1,004,109 | + | -2.2 | |||
1,004,117 | + | +0.6 | |||
1,004,177 | - | +0.5 | |||
1,004,335 | + | fliM | DVU0910 | 0.11 | +0.1 |
1,004,452 | + | fliM | DVU0910 | 0.23 | +0.3 |
1,004,645 | - | fliM | DVU0910 | 0.43 | -0.2 |
1,004,679 | - | fliM | DVU0910 | 0.46 | +0.0 |
1,004,679 | - | fliM | DVU0910 | 0.46 | +0.4 |
1,004,688 | - | fliM | DVU0910 | 0.47 | +2.1 |
1,004,690 | + | fliM | DVU0910 | 0.47 | +0.4 |
1,004,768 | - | fliM | DVU0910 | 0.55 | -0.4 |
1,004,903 | + | fliM | DVU0910 | 0.69 | +0.0 |
1,004,945 | - | fliM | DVU0910 | 0.73 | +0.4 |
1,004,979 | + | fliM | DVU0910 | 0.77 | -0.1 |
1,005,058 | - | fliM | DVU0910 | 0.85 | +1.0 |
1,005,065 | - | fliM | DVU0910 | 0.85 | +0.6 |
1,005,083 | - | fliM | DVU0910 | 0.87 | +0.3 |
1,005,121 | - | +0.6 | |||
1,005,229 | - | +0.0 | |||
1,005,379 | + | -1.5 | |||
1,005,482 | + | -2.8 | |||
1,005,533 | - | +0.1 | |||
1,005,577 | - | -0.3 | |||
1,005,680 | + | +0.0 | |||
1,005,723 | - | +0.2 | |||
1,005,807 | - | -0.2 | |||
1,005,963 | - | truA | DVU0911 | 0.17 | +0.5 |
1,006,088 | - | truA | DVU0911 | 0.31 | +0.0 |
1,006,112 | - | truA | DVU0911 | 0.34 | +0.4 |
1,006,112 | - | truA | DVU0911 | 0.34 | -0.3 |
1,006,130 | - | truA | DVU0911 | 0.36 | +0.7 |
Or see this region's nucleotide sequence