Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0099 and DORF807 overlap by 13 nucleotides DORF807 and flrC overlap by 4 nucleotides
DVUA0099: DVUA0099 - HAMP domain protein (TIGR), at 133,570 to 135,753
DVUA0099
DORF807: DORF807 - no description, at 135,741 to 136,115
DORF807
DVUA0100: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 136,112 to 137,839
flrC
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1 at 134.812 kb on + strand, within DVUA0099 at 134.820 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 135.024 kb on - strand, within DVUA0099 at 135.051 kb on + strand, within DVUA0099 at 135.229 kb on + strand, within DVUA0099 at 135.341 kb on + strand, within DVUA0099 at 135.344 kb on - strand, within DVUA0099 at 135.351 kb on + strand, within DVUA0099 at 135.356 kb on + strand, within DVUA0099 at 135.500 kb on - strand, within DVUA0099 at 135.561 kb on + strand at 135.569 kb on - strand at 135.635 kb on + strand at 135.643 kb on - strand at 135.734 kb on + strand at 135.762 kb on - strand at 135.849 kb on - strand, within DORF807 at 135.924 kb on + strand, within DORF807 at 135.932 kb on - strand, within DORF807 at 135.998 kb on - strand, within DORF807 at 136.048 kb on - strand, within DORF807 at 136.064 kb on - strand, within DORF807 at 136.066 kb on + strand, within DORF807 at 136.092 kb on - strand at 136.092 kb on - strand at 136.110 kb on + strand at 136.368 kb on + strand, within flrC at 136.416 kb on + strand, within flrC at 136.437 kb on + strand, within flrC at 136.478 kb on - strand, within flrC at 136.540 kb on - strand, within flrC at 136.557 kb on + strand, within flrC at 136.633 kb on + strand, within flrC at 136.638 kb on - strand, within flrC at 136.638 kb on - strand, within flrC at 136.652 kb on - strand, within flrC at 136.674 kb on + strand, within flrC at 136.868 kb on + strand, within flrC at 136.912 kb on + strand, within flrC at 136.958 kb on - strand, within flrC at 137.015 kb on - strand, within flrC
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 134,812 + DVUA0099 0.57 -0.8 134,820 - DVUA0099 0.57 +1.4 134,873 - DVUA0099 0.60 -0.6 134,873 - DVUA0099 0.60 +0.7 135,024 - DVUA0099 0.67 +0.4 135,051 + DVUA0099 0.68 -0.1 135,229 + DVUA0099 0.76 -0.4 135,341 + DVUA0099 0.81 +1.2 135,344 - DVUA0099 0.81 +0.5 135,351 + DVUA0099 0.82 -1.3 135,356 + DVUA0099 0.82 -1.0 135,500 - DVUA0099 0.88 -0.4 135,561 + +0.1 135,569 - +0.1 135,635 + -0.1 135,643 - +0.1 135,734 + -0.9 135,762 - -0.2 135,849 - DORF807 0.29 +0.1 135,924 + DORF807 0.49 +0.6 135,932 - DORF807 0.51 +0.5 135,998 - DORF807 0.69 +0.7 136,048 - DORF807 0.82 -0.1 136,064 - DORF807 0.86 +0.1 136,066 + DORF807 0.87 +0.3 136,092 - -0.2 136,092 - -0.2 136,110 + -1.2 136,368 + flrC DVUA0100 0.15 +0.2 136,416 + flrC DVUA0100 0.18 +0.4 136,437 + flrC DVUA0100 0.19 +0.7 136,478 - flrC DVUA0100 0.21 +0.5 136,540 - flrC DVUA0100 0.25 -0.5 136,557 + flrC DVUA0100 0.26 -0.3 136,633 + flrC DVUA0100 0.30 -0.4 136,638 - flrC DVUA0100 0.30 -0.3 136,638 - flrC DVUA0100 0.30 +0.1 136,652 - flrC DVUA0100 0.31 -0.6 136,674 + flrC DVUA0100 0.33 +0.5 136,868 + flrC DVUA0100 0.44 -0.2 136,912 + flrC DVUA0100 0.46 -0.2 136,958 - flrC DVUA0100 0.49 -0.5 137,015 - flrC DVUA0100 0.52 -0.1
Or see this region's nucleotide sequence